miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16153 5' -58.8 NC_004065.1 + 8699 0.65 0.903239
Target:  5'- aCUuCUGCGGCGAcgugcaauucaguUCGGGAUCU--GGCu -3'
miRNA:   3'- -GAcGACGCCGCU-------------AGCCUUGGAgcCCG- -5'
16153 5' -58.8 NC_004065.1 + 1810 0.66 0.897774
Target:  5'- -cGCgGCGGCGAUCGcGGuuCC-CGuGGUg -3'
miRNA:   3'- gaCGaCGCCGCUAGC-CUu-GGaGC-CCG- -5'
16153 5' -58.8 NC_004065.1 + 208885 0.66 0.897774
Target:  5'- gUGC-GCGGUGA-CGGAcugaguUCUCcGGGCg -3'
miRNA:   3'- gACGaCGCCGCUaGCCUu-----GGAG-CCCG- -5'
16153 5' -58.8 NC_004065.1 + 177133 0.66 0.897774
Target:  5'- gUGUUGUGuGUcAUCGGAggcuuuACCgCGGGCg -3'
miRNA:   3'- gACGACGC-CGcUAGCCU------UGGaGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 94837 0.66 0.897774
Target:  5'- -gGCgGCGGCGcccaaCaGucCCUCGGGCa -3'
miRNA:   3'- gaCGaCGCCGCua---GcCuuGGAGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 146596 0.66 0.897774
Target:  5'- -cGggGUGGCcAUCGGGGCCgucggCGGGg -3'
miRNA:   3'- gaCgaCGCCGcUAGCCUUGGa----GCCCg -5'
16153 5' -58.8 NC_004065.1 + 109709 0.66 0.897157
Target:  5'- -cGC-GCGGCGAcccUCGGGgggcaacgcuuucGCCUacaaggacccgcCGGGCu -3'
miRNA:   3'- gaCGaCGCCGCU---AGCCU-------------UGGA------------GCCCG- -5'
16153 5' -58.8 NC_004065.1 + 125398 0.66 0.897157
Target:  5'- cCUGCUucgcccgcaggucGUGGaaGUCGGccggcgccagcGCCUCGGGCa -3'
miRNA:   3'- -GACGA-------------CGCCgcUAGCCu----------UGGAGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 185294 0.66 0.891504
Target:  5'- aUGuCUucuCGGaUGAUCGGAGUCUUGGGCg -3'
miRNA:   3'- gAC-GAc--GCC-GCUAGCCUUGGAGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 165541 0.66 0.891504
Target:  5'- -cGCguggggacggGUGGCugGAUCGGAGgaucagauguuuCCUCGGGUc -3'
miRNA:   3'- gaCGa---------CGCCG--CUAGCCUU------------GGAGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 73122 0.66 0.891504
Target:  5'- gUGCcgGCGGagGAUCGGGACCcCGacGCg -3'
miRNA:   3'- gACGa-CGCCg-CUAGCCUUGGaGCc-CG- -5'
16153 5' -58.8 NC_004065.1 + 97146 0.66 0.891504
Target:  5'- aCUGCUGCuGGUcauccGAcUCGGAggggcggguuccACUUCGGGg -3'
miRNA:   3'- -GACGACG-CCG-----CU-AGCCU------------UGGAGCCCg -5'
16153 5' -58.8 NC_004065.1 + 67671 0.66 0.891504
Target:  5'- -gGgaGCGGCGG-CGGcGGCggCGGGCc -3'
miRNA:   3'- gaCgaCGCCGCUaGCC-UUGgaGCCCG- -5'
16153 5' -58.8 NC_004065.1 + 93829 0.66 0.891504
Target:  5'- gCUGgUGaCGGCG--CGGAACuCUCGGuaGCg -3'
miRNA:   3'- -GACgAC-GCCGCuaGCCUUG-GAGCC--CG- -5'
16153 5' -58.8 NC_004065.1 + 143653 0.66 0.87835
Target:  5'- ----cGgGGCGAcgCGuGGACCUCGGGa -3'
miRNA:   3'- gacgaCgCCGCUa-GC-CUUGGAGCCCg -5'
16153 5' -58.8 NC_004065.1 + 221220 0.66 0.87835
Target:  5'- -gGUUGUGGUGAUCGGcgGACCUCc--- -3'
miRNA:   3'- gaCGACGCCGCUAGCC--UUGGAGcccg -5'
16153 5' -58.8 NC_004065.1 + 84344 0.66 0.87835
Target:  5'- -cGUUaGCGGCGGUCGucGAAUC-CGGGa -3'
miRNA:   3'- gaCGA-CGCCGCUAGC--CUUGGaGCCCg -5'
16153 5' -58.8 NC_004065.1 + 148872 0.66 0.87835
Target:  5'- -gGCgGCGGCGGggGGcgagggggacgaAACCUCggaGGGCg -3'
miRNA:   3'- gaCGaCGCCGCUagCC------------UUGGAG---CCCG- -5'
16153 5' -58.8 NC_004065.1 + 56915 0.66 0.87835
Target:  5'- -gGCUGCGGU---CGGAACCgcgCGucGGCc -3'
miRNA:   3'- gaCGACGCCGcuaGCCUUGGa--GC--CCG- -5'
16153 5' -58.8 NC_004065.1 + 161636 0.66 0.871473
Target:  5'- gCUGCgccacgaacGCGGCGAUCuucGCCUCGGuCg -3'
miRNA:   3'- -GACGa--------CGCCGCUAGccuUGGAGCCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.