miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16154 3' -53.6 NC_004065.1 + 116351 0.66 0.987214
Target:  5'- aGAGAAGCUGgagaGCgagaGGGCGgggaACCCGGc -3'
miRNA:   3'- cUUCUUCGACaa--CG----UCUGC----UGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 116126 0.66 0.987214
Target:  5'- cGGAGGuAGCUGgucgGCGuccugcGGCGGCUCGGg -3'
miRNA:   3'- -CUUCU-UCGACaa--CGU------CUGCUGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 59764 0.66 0.987214
Target:  5'- uGAGGcGGCUGUUgaGCAcgggcagcucGACGGgCCGGUu -3'
miRNA:   3'- -CUUCuUCGACAA--CGU----------CUGCUgGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 61390 0.66 0.985593
Target:  5'- -uGGAAGCUGUUuccGCAG-CGAUCCa-- -3'
miRNA:   3'- cuUCUUCGACAA---CGUCuGCUGGGcca -5'
16154 3' -53.6 NC_004065.1 + 63033 0.66 0.98382
Target:  5'- cGGAG-AGCUGUccgGCGcgcgaggcGACGAuCCCGGa -3'
miRNA:   3'- -CUUCuUCGACAa--CGU--------CUGCU-GGGCCa -5'
16154 3' -53.6 NC_004065.1 + 23875 0.66 0.98382
Target:  5'- uAAGAAGUUGUUG-GGAC-ACUCGGUc -3'
miRNA:   3'- cUUCUUCGACAACgUCUGcUGGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 185972 0.66 0.98382
Target:  5'- uGAAGGAGauggcgaUGaUGCGGAUGGCgCGGa -3'
miRNA:   3'- -CUUCUUCg------ACaACGUCUGCUGgGCCa -5'
16154 3' -53.6 NC_004065.1 + 105487 0.66 0.98382
Target:  5'- cGAGGAGCUGUuccaccUGguGGCGcacguGCCCGa- -3'
miRNA:   3'- cUUCUUCGACA------ACguCUGC-----UGGGCca -5'
16154 3' -53.6 NC_004065.1 + 35092 0.66 0.98382
Target:  5'- -cGGggGCUGUcucUGU--GCGAgCCGGUg -3'
miRNA:   3'- cuUCuuCGACA---ACGucUGCUgGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 136577 0.66 0.981887
Target:  5'- cGGGGAGCUGguccUGCGGuccgGgGAUCCGGg -3'
miRNA:   3'- cUUCUUCGACa---ACGUC----UgCUGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 211154 0.66 0.981887
Target:  5'- cGggGggGa----GCGGGCGugCCGGg -3'
miRNA:   3'- -CuuCuuCgacaaCGUCUGCugGGCCa -5'
16154 3' -53.6 NC_004065.1 + 113762 0.67 0.975044
Target:  5'- cGAGGGacAGCgcgGcgGCAGACGACCgacuCGGg -3'
miRNA:   3'- -CUUCU--UCGa--CaaCGUCUGCUGG----GCCa -5'
16154 3' -53.6 NC_004065.1 + 184894 0.67 0.975044
Target:  5'- aGAGAGGaucgGgaGCGGGCG-CCCGGg -3'
miRNA:   3'- cUUCUUCga--CaaCGUCUGCuGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 174214 0.67 0.97239
Target:  5'- -cAGGAGCUcga-UAGACGACCUGGUc -3'
miRNA:   3'- cuUCUUCGAcaacGUCUGCUGGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 24449 0.67 0.97239
Target:  5'- cGGGAGGCUGgcgGUAGugGggcaGCUCGGa -3'
miRNA:   3'- cUUCUUCGACaa-CGUCugC----UGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 113423 0.67 0.966485
Target:  5'- cAGGGAGCUGc-GCAGagcgGCGGCCgGGg -3'
miRNA:   3'- cUUCUUCGACaaCGUC----UGCUGGgCCa -5'
16154 3' -53.6 NC_004065.1 + 126248 0.67 0.966485
Target:  5'- cGGAGAucaaccAGCUGcUGCGcGACGGUCCGGa -3'
miRNA:   3'- -CUUCU------UCGACaACGU-CUGCUGGGCCa -5'
16154 3' -53.6 NC_004065.1 + 191224 0.68 0.956038
Target:  5'- cGAGAGGCggaugGggcucUGCGGGCGccagaccgucaGCCCGGUg -3'
miRNA:   3'- cUUCUUCGa----Ca----ACGUCUGC-----------UGGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 136411 0.68 0.956038
Target:  5'- cGGGGAGCUGgucCuGGgGGCCCGGUg -3'
miRNA:   3'- cUUCUUCGACaacGuCUgCUGGGCCA- -5'
16154 3' -53.6 NC_004065.1 + 194631 0.68 0.952113
Target:  5'- gGggGGAGCUGUUGCgcugcgccaGGGCGugCaauGGc -3'
miRNA:   3'- -CuuCUUCGACAACG---------UCUGCugGg--CCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.