miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16154 5' -63.9 NC_004065.1 + 26051 0.66 0.696464
Target:  5'- gUCGCCauguuCGUCG-CGGUAacGGCCCUGUg -3'
miRNA:   3'- -AGUGGcc---GCGGCaGCCGU--CCGGGACG- -5'
16154 5' -63.9 NC_004065.1 + 79111 0.66 0.696464
Target:  5'- cCGCCGGagcCGCCGUCGGacc-CCUUGUu -3'
miRNA:   3'- aGUGGCC---GCGGCAGCCguccGGGACG- -5'
16154 5' -63.9 NC_004065.1 + 120344 0.66 0.696464
Target:  5'- cUCGgCGGCgauGUCGUCGGagagcgcccggAGGaCCCUGCc -3'
miRNA:   3'- -AGUgGCCG---CGGCAGCCg----------UCC-GGGACG- -5'
16154 5' -63.9 NC_004065.1 + 25703 0.66 0.696464
Target:  5'- ---aUGGCGUCGUCcGgGGGCCC-GCg -3'
miRNA:   3'- agugGCCGCGGCAGcCgUCCGGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 76377 0.66 0.696464
Target:  5'- gCGCCGGCGCCGccgCGGaugaGCUCgccGCc -3'
miRNA:   3'- aGUGGCCGCGGCa--GCCguc-CGGGa--CG- -5'
16154 5' -63.9 NC_004065.1 + 83183 0.66 0.696464
Target:  5'- -gACCaGGCGCUccCGGC-GGCCC-GCu -3'
miRNA:   3'- agUGG-CCGCGGcaGCCGuCCGGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 2524 0.66 0.696464
Target:  5'- cUCACCGucaaCCGUCGGCuGGUCCg-- -3'
miRNA:   3'- -AGUGGCcgc-GGCAGCCGuCCGGGacg -5'
16154 5' -63.9 NC_004065.1 + 198107 0.66 0.695536
Target:  5'- --uUCGGCcacGCUGUCGGCgacgcgccgcgucAGGCCC-GCu -3'
miRNA:   3'- aguGGCCG---CGGCAGCCG-------------UCCGGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 202128 0.66 0.695536
Target:  5'- cCACUcGC-CCGUCGGCAGGaucggacggagguCCCgGCc -3'
miRNA:   3'- aGUGGcCGcGGCAGCCGUCC-------------GGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 98020 0.66 0.68716
Target:  5'- cCGCCGGCGCguggcggucguUGUCGGU-GuaCCUGUu -3'
miRNA:   3'- aGUGGCCGCG-----------GCAGCCGuCcgGGACG- -5'
16154 5' -63.9 NC_004065.1 + 175920 0.66 0.68716
Target:  5'- gUCGCggcgaugaCGGCGgCGUauaUGGCucuGGCUCUGCc -3'
miRNA:   3'- -AGUG--------GCCGCgGCA---GCCGu--CCGGGACG- -5'
16154 5' -63.9 NC_004065.1 + 28537 0.66 0.68716
Target:  5'- uUCACCGcGgGCCGUCGGgucgacCGGGaUCUcGCg -3'
miRNA:   3'- -AGUGGC-CgCGGCAGCC------GUCC-GGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 200017 0.66 0.68716
Target:  5'- gCGCCGGUGaCgGUCGcGCAGcCUCUGg -3'
miRNA:   3'- aGUGGCCGC-GgCAGC-CGUCcGGGACg -5'
16154 5' -63.9 NC_004065.1 + 163250 0.66 0.68716
Target:  5'- uUCGUCGGCGCag-CGGCGGcGCCg-GCg -3'
miRNA:   3'- -AGUGGCCGCGgcaGCCGUC-CGGgaCG- -5'
16154 5' -63.9 NC_004065.1 + 35401 0.66 0.68716
Target:  5'- gUCAUCGGCGCCGUgGGagAGuaCCg-- -3'
miRNA:   3'- -AGUGGCCGCGGCAgCCg-UCcgGGacg -5'
16154 5' -63.9 NC_004065.1 + 90235 0.66 0.68716
Target:  5'- cCAagaGGuCGgCGUCGGCgaAGGCCC-GCg -3'
miRNA:   3'- aGUgg-CC-GCgGCAGCCG--UCCGGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 130876 0.66 0.686228
Target:  5'- -aGgCGGCcacgguguuuaccGCCGUCGGCc-GCaCCUGCg -3'
miRNA:   3'- agUgGCCG-------------CGGCAGCCGucCG-GGACG- -5'
16154 5' -63.9 NC_004065.1 + 135654 0.66 0.677817
Target:  5'- cUCGCCGcggccguaacGCG-CGUCGGgGGGCUC-GCg -3'
miRNA:   3'- -AGUGGC----------CGCgGCAGCCgUCCGGGaCG- -5'
16154 5' -63.9 NC_004065.1 + 60159 0.66 0.677817
Target:  5'- -gAUCGGCGCCcgccaugcacagGUCGacGCuGGCCCgcacgGCg -3'
miRNA:   3'- agUGGCCGCGG------------CAGC--CGuCCGGGa----CG- -5'
16154 5' -63.9 NC_004065.1 + 4394 0.66 0.672195
Target:  5'- -aGCCGGaguGCUGUucggagcgguggccaCGGCGGGCCUgacGCu -3'
miRNA:   3'- agUGGCCg--CGGCA---------------GCCGUCCGGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.