miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16155 3' -61.3 NC_004065.1 + 189127 0.66 0.845749
Target:  5'- cCCGG-ACaaGCCGGCGCGuGcGGu-GAUCa -3'
miRNA:   3'- -GGCCaUGg-CGGCCGCGC-C-CCuuCUGG- -5'
16155 3' -61.3 NC_004065.1 + 6631 0.66 0.845749
Target:  5'- uCCGcgGCUGUCGGa--GGGGGAGACg -3'
miRNA:   3'- -GGCcaUGGCGGCCgcgCCCCUUCUGg -5'
16155 3' -61.3 NC_004065.1 + 34439 0.66 0.845749
Target:  5'- aCGG-AUCGCaCGGC-CGGGGGAcGCg -3'
miRNA:   3'- gGCCaUGGCG-GCCGcGCCCCUUcUGg -5'
16155 3' -61.3 NC_004065.1 + 109826 0.66 0.845749
Target:  5'- cUCGucGCCGuCCuGCuGCGGcGGggGGCCa -3'
miRNA:   3'- -GGCcaUGGC-GGcCG-CGCC-CCuuCUGG- -5'
16155 3' -61.3 NC_004065.1 + 71945 0.66 0.845749
Target:  5'- cCUGGUcggaggcgacGCCGCCGGUGgagcCGGGcagcccGGAGGCg -3'
miRNA:   3'- -GGCCA----------UGGCGGCCGC----GCCC------CUUCUGg -5'
16155 3' -61.3 NC_004065.1 + 82663 0.66 0.845749
Target:  5'- cCCGGcaccaACCuCUGGUGCGcaGGGucGGCCa -3'
miRNA:   3'- -GGCCa----UGGcGGCCGCGC--CCCuuCUGG- -5'
16155 3' -61.3 NC_004065.1 + 68470 0.66 0.845749
Target:  5'- cCUGGgcgagcUGCUGUCGGUGaaGaGGGAGACCc -3'
miRNA:   3'- -GGCC------AUGGCGGCCGCgcC-CCUUCUGG- -5'
16155 3' -61.3 NC_004065.1 + 49675 0.66 0.845749
Target:  5'- gCGGUGCCGCCGGaGCaGGcgucccuccuGAuGACg -3'
miRNA:   3'- gGCCAUGGCGGCCgCGcCC----------CUuCUGg -5'
16155 3' -61.3 NC_004065.1 + 124473 0.66 0.845749
Target:  5'- gCC-GUGCCGCUGcGC-CGGGuccAGGGCCg -3'
miRNA:   3'- -GGcCAUGGCGGC-CGcGCCCc--UUCUGG- -5'
16155 3' -61.3 NC_004065.1 + 31681 0.66 0.838287
Target:  5'- -aGG-ACC-CCGGCGagcugaGGGGGAucuGGCCg -3'
miRNA:   3'- ggCCaUGGcGGCCGCg-----CCCCUU---CUGG- -5'
16155 3' -61.3 NC_004065.1 + 11822 0.66 0.838287
Target:  5'- gCCGG-ACggaGUCGGUgGCGGGGucGGACg -3'
miRNA:   3'- -GGCCaUGg--CGGCCG-CGCCCCu-UCUGg -5'
16155 3' -61.3 NC_004065.1 + 203144 0.66 0.838287
Target:  5'- uCUGG-ACCgGCCGGCG-GuGGAAGAUUg -3'
miRNA:   3'- -GGCCaUGG-CGGCCGCgCcCCUUCUGG- -5'
16155 3' -61.3 NC_004065.1 + 30932 0.66 0.832969
Target:  5'- gCCGGga-CGCagaggaugagauacuUGGCGCacuuuucGGGGAAGACg -3'
miRNA:   3'- -GGCCaugGCG---------------GCCGCG-------CCCCUUCUGg -5'
16155 3' -61.3 NC_004065.1 + 75733 0.66 0.831436
Target:  5'- aCCGGgccguguuugcgcagGCUGCCccaGCGCugacccGGGGGAGGCg -3'
miRNA:   3'- -GGCCa--------------UGGCGGc--CGCG------CCCCUUCUGg -5'
16155 3' -61.3 NC_004065.1 + 99861 0.66 0.830667
Target:  5'- cCCGaucGCCGCCGuGCGaggGGGGAaagGGAUg -3'
miRNA:   3'- -GGCca-UGGCGGC-CGCg--CCCCU---UCUGg -5'
16155 3' -61.3 NC_004065.1 + 30521 0.66 0.830667
Target:  5'- gUGGcgGCCGCC-GCGUGGGaaGAGACg -3'
miRNA:   3'- gGCCa-UGGCGGcCGCGCCCc-UUCUGg -5'
16155 3' -61.3 NC_004065.1 + 186682 0.66 0.830667
Target:  5'- gUCGGggaCG-CGGCGCGuGGGGcguccccgccGGGCCa -3'
miRNA:   3'- -GGCCaugGCgGCCGCGC-CCCU----------UCUGG- -5'
16155 3' -61.3 NC_004065.1 + 105379 0.66 0.830667
Target:  5'- cCCGGacucgcugACgGCCGGCGaGGaGGcgcuGACCa -3'
miRNA:   3'- -GGCCa-------UGgCGGCCGCgCC-CCuu--CUGG- -5'
16155 3' -61.3 NC_004065.1 + 119608 0.66 0.830667
Target:  5'- -aGGa--CGCCGGCgGCGGaGGAGACg -3'
miRNA:   3'- ggCCaugGCGGCCG-CGCCcCUUCUGg -5'
16155 3' -61.3 NC_004065.1 + 170609 0.66 0.830667
Target:  5'- gUCGGagACauugGCCGGCGuCaGGGAcguGACCa -3'
miRNA:   3'- -GGCCa-UGg---CGGCCGC-GcCCCUu--CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.