miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16155 5' -57.3 NC_004065.1 + 41445 0.66 0.930359
Target:  5'- gGGGUgCUGGCCGUggagAGCguccugcucuccgggCUCGAgCUGg -3'
miRNA:   3'- gUCCAgGACCGGCGa---UUG---------------GAGCU-GAC- -5'
16155 5' -57.3 NC_004065.1 + 155881 0.66 0.923138
Target:  5'- gGGGUUCUcGGCCcggGCacccGCCUCGACg- -3'
miRNA:   3'- gUCCAGGA-CCGG---CGau--UGGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 23625 0.66 0.923138
Target:  5'- gCGGGUggaCgGGCgGCUGGCCUCGGg-- -3'
miRNA:   3'- -GUCCAg--GaCCGgCGAUUGGAGCUgac -5'
16155 5' -57.3 NC_004065.1 + 46281 0.66 0.912059
Target:  5'- -uGGUCgaGGCCGUgggcGACCUgGAcCUGu -3'
miRNA:   3'- guCCAGgaCCGGCGa---UUGGAgCU-GAC- -5'
16155 5' -57.3 NC_004065.1 + 208381 0.66 0.906186
Target:  5'- aCAGGUCUUGGaCGUgauuaUCGGCUGg -3'
miRNA:   3'- -GUCCAGGACCgGCGauuggAGCUGAC- -5'
16155 5' -57.3 NC_004065.1 + 225269 0.67 0.900092
Target:  5'- aCAGaGaagCUGGCCGCacgUAGCCUggCGACUGg -3'
miRNA:   3'- -GUC-Cag-GACCGGCG---AUUGGA--GCUGAC- -5'
16155 5' -57.3 NC_004065.1 + 201996 0.67 0.891845
Target:  5'- gAGGUCgUUGGCCGCcAAcgcgauggcguccuCCUCGGCg- -3'
miRNA:   3'- gUCCAG-GACCGGCGaUU--------------GGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 31473 0.67 0.887254
Target:  5'- -cGGUCC-GuGCCGCgcgcgGACCUggugCGGCUGa -3'
miRNA:   3'- guCCAGGaC-CGGCGa----UUGGA----GCUGAC- -5'
16155 5' -57.3 NC_004065.1 + 8248 0.67 0.887254
Target:  5'- aAGGUCCUuucgucgcGGCCG-UGACCUUucugcucaucgGACUGa -3'
miRNA:   3'- gUCCAGGA--------CCGGCgAUUGGAG-----------CUGAC- -5'
16155 5' -57.3 NC_004065.1 + 141366 0.67 0.880516
Target:  5'- gCGGGUgCUGGCgGCgcucgaCUCGACg- -3'
miRNA:   3'- -GUCCAgGACCGgCGauug--GAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 178052 0.67 0.880516
Target:  5'- gAGGUCCUGGgCacacacuuCUGACCUCGuCUc -3'
miRNA:   3'- gUCCAGGACCgGc-------GAUUGGAGCuGAc -5'
16155 5' -57.3 NC_004065.1 + 5363 0.67 0.873571
Target:  5'- aCAGcUCUUGGCgcucguaacugUGCUAGCCUCGAUg- -3'
miRNA:   3'- -GUCcAGGACCG-----------GCGAUUGGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 163742 0.67 0.866422
Target:  5'- gGGGUUuuaCUGGUCGCUuucccCCUCGACc- -3'
miRNA:   3'- gUCCAG---GACCGGCGAuu---GGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 29677 0.68 0.859077
Target:  5'- aAGaGUCCggcaGGuuGCUGAgCCUCGGCg- -3'
miRNA:   3'- gUC-CAGGa---CCggCGAUU-GGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 60760 0.69 0.811175
Target:  5'- gAGGUCgaGGCCGCacagGGCCgCGGCc- -3'
miRNA:   3'- gUCCAGgaCCGGCGa---UUGGaGCUGac -5'
16155 5' -57.3 NC_004065.1 + 124487 0.69 0.802616
Target:  5'- cCGGGUCCagGGCCGCgcgGAUCUCcagcauCUGc -3'
miRNA:   3'- -GUCCAGGa-CCGGCGa--UUGGAGcu----GAC- -5'
16155 5' -57.3 NC_004065.1 + 170094 0.69 0.793912
Target:  5'- cCGGGcUUCUGGCCGC--GCCgCGACa- -3'
miRNA:   3'- -GUCC-AGGACCGGCGauUGGaGCUGac -5'
16155 5' -57.3 NC_004065.1 + 77177 0.69 0.785072
Target:  5'- -cGGUggcUCUGGCUGCcGACCUCGAUc- -3'
miRNA:   3'- guCCA---GGACCGGCGaUUGGAGCUGac -5'
16155 5' -57.3 NC_004065.1 + 85498 0.7 0.7485
Target:  5'- -uGGUgCUGGCCaugucGCUGGCgCUCGGCUu -3'
miRNA:   3'- guCCAgGACCGG-----CGAUUG-GAGCUGAc -5'
16155 5' -57.3 NC_004065.1 + 168837 0.7 0.739097
Target:  5'- gCGGGUCCUGGCCuacGCcGGgUUCGGCg- -3'
miRNA:   3'- -GUCCAGGACCGG---CGaUUgGAGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.