miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16156 3' -57.5 NC_004065.1 + 107955 0.66 0.926656
Target:  5'- aUCGGCCCugugCAUCUacaaggguugaGaCCGGCAGCGGacGGa -3'
miRNA:   3'- -AGCUGGG----GUAGA-----------C-GGUCGUCGUCa-CC- -5'
16156 3' -57.5 NC_004065.1 + 189556 0.66 0.923526
Target:  5'- -gGACCCCAgcgCgaaaaaGagagaaaucgugaaCAGCAGCGGUGGu -3'
miRNA:   3'- agCUGGGGUa--Ga-----Cg-------------GUCGUCGUCACC- -5'
16156 3' -57.5 NC_004065.1 + 190793 0.66 0.921395
Target:  5'- --aACCUCgcGUCUGCgAGaCGGUAGUGGu -3'
miRNA:   3'- agcUGGGG--UAGACGgUC-GUCGUCACC- -5'
16156 3' -57.5 NC_004065.1 + 22143 0.66 0.920856
Target:  5'- cCGGCCCCGcuacccuUCgacgugacgGUgAGgGGCGGUGGg -3'
miRNA:   3'- aGCUGGGGU-------AGa--------CGgUCgUCGUCACC- -5'
16156 3' -57.5 NC_004065.1 + 20154 0.66 0.91591
Target:  5'- cCGugCCCAgugUCaGCCAuGCGGCGGa-- -3'
miRNA:   3'- aGCugGGGU---AGaCGGU-CGUCGUCacc -5'
16156 3' -57.5 NC_004065.1 + 122194 0.66 0.91591
Target:  5'- gUCGugCCCAUCUacggcGCCuacaGGCuGGUGGc -3'
miRNA:   3'- -AGCugGGGUAGA-----CGGucg-UCG-UCACC- -5'
16156 3' -57.5 NC_004065.1 + 122868 0.66 0.91591
Target:  5'- --aGCCCCAccugcgagCUGcCCAGCAGaUGGUGGc -3'
miRNA:   3'- agcUGGGGUa-------GAC-GGUCGUC-GUCACC- -5'
16156 3' -57.5 NC_004065.1 + 194806 0.66 0.91591
Target:  5'- gUCGAgCCCCugaacGCC-GUGGCGGUGGc -3'
miRNA:   3'- -AGCU-GGGGuaga-CGGuCGUCGUCACC- -5'
16156 3' -57.5 NC_004065.1 + 209933 0.66 0.910203
Target:  5'- gUCGuuCCCGUCgauaugccGUCAGaCGGCAGUGc -3'
miRNA:   3'- -AGCugGGGUAGa-------CGGUC-GUCGUCACc -5'
16156 3' -57.5 NC_004065.1 + 168588 0.66 0.904276
Target:  5'- cUCGGCCCgAg-UGCUAGCuGCGGaGGc -3'
miRNA:   3'- -AGCUGGGgUagACGGUCGuCGUCaCC- -5'
16156 3' -57.5 NC_004065.1 + 131165 0.66 0.904276
Target:  5'- aCGACCCCcgUU-CCGGCAGCGc--- -3'
miRNA:   3'- aGCUGGGGuaGAcGGUCGUCGUcacc -5'
16156 3' -57.5 NC_004065.1 + 18724 0.66 0.898131
Target:  5'- gUCGAUCaCAgaguCCAGCAGCAGUGa -3'
miRNA:   3'- -AGCUGGgGUagacGGUCGUCGUCACc -5'
16156 3' -57.5 NC_004065.1 + 8312 0.66 0.898131
Target:  5'- aCGAUCaCCG--UGUCGGUAGCGGUGa -3'
miRNA:   3'- aGCUGG-GGUagACGGUCGUCGUCACc -5'
16156 3' -57.5 NC_004065.1 + 128780 0.66 0.898131
Target:  5'- -gGGCgCCGUC-GCCGGCGGCAccucUGGc -3'
miRNA:   3'- agCUGgGGUAGaCGGUCGUCGUc---ACC- -5'
16156 3' -57.5 NC_004065.1 + 196497 0.66 0.898131
Target:  5'- cCGAgCgCAUCUGCCAGCAacuCGGUa- -3'
miRNA:   3'- aGCUgGgGUAGACGGUCGUc--GUCAcc -5'
16156 3' -57.5 NC_004065.1 + 120435 0.67 0.89177
Target:  5'- cCGACCUCGUCcggGCCcucuugcugucgGGCGGCGGg-- -3'
miRNA:   3'- aGCUGGGGUAGa--CGG------------UCGUCGUCacc -5'
16156 3' -57.5 NC_004065.1 + 99541 0.67 0.885195
Target:  5'- gUCGGCgcuCCCGUCUcGCC-GCGGCGGa-- -3'
miRNA:   3'- -AGCUG---GGGUAGA-CGGuCGUCGUCacc -5'
16156 3' -57.5 NC_004065.1 + 115919 0.67 0.885195
Target:  5'- gUCGGCCUCg---GCCGGCAGCucgcUGGc -3'
miRNA:   3'- -AGCUGGGGuagaCGGUCGUCGuc--ACC- -5'
16156 3' -57.5 NC_004065.1 + 161300 0.67 0.878413
Target:  5'- gCGACCCCGUCagGau-GCGGUuGUGGu -3'
miRNA:   3'- aGCUGGGGUAGa-CgguCGUCGuCACC- -5'
16156 3' -57.5 NC_004065.1 + 47845 0.67 0.871425
Target:  5'- gCGGCCCuCAUgaUGUUGGCGGCgucguAGUGGg -3'
miRNA:   3'- aGCUGGG-GUAg-ACGGUCGUCG-----UCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.