miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16156 5' -58 NC_004065.1 + 202355 0.66 0.933359
Target:  5'- -cCGGCCUcCaGGCCGGa--UCUCCGg -3'
miRNA:   3'- gaGCUGGAuGaCCGGCCagcAGAGGC- -5'
16156 5' -58 NC_004065.1 + 142775 0.66 0.933359
Target:  5'- -aCGGCCUGCUGgugguggcGCCGGgggCGgccaUCUUCGa -3'
miRNA:   3'- gaGCUGGAUGAC--------CGGCCa--GC----AGAGGC- -5'
16156 5' -58 NC_004065.1 + 116030 0.66 0.933359
Target:  5'- gUCGACCgUGCUGGCgaggaGGcCGUaugagUCCGa -3'
miRNA:   3'- gAGCUGG-AUGACCGg----CCaGCAg----AGGC- -5'
16156 5' -58 NC_004065.1 + 199160 0.66 0.912582
Target:  5'- gCUCGaacccGCCgucgACaGGCUGGUCGUCgUCGg -3'
miRNA:   3'- -GAGC-----UGGa---UGaCCGGCCAGCAGaGGC- -5'
16156 5' -58 NC_004065.1 + 55664 0.66 0.906853
Target:  5'- gUCGGC--ACUGGCCGGucUCGUgcUUCCa -3'
miRNA:   3'- gAGCUGgaUGACCGGCC--AGCA--GAGGc -5'
16156 5' -58 NC_004065.1 + 109564 0.66 0.906853
Target:  5'- -gCGACCUcgaGgUGGCCGccUGUCUCCu -3'
miRNA:   3'- gaGCUGGA---UgACCGGCcaGCAGAGGc -5'
16156 5' -58 NC_004065.1 + 110316 0.67 0.900911
Target:  5'- uCUCGcAgCU-CUGGCCGGggcUCGUgCUCCu -3'
miRNA:   3'- -GAGC-UgGAuGACCGGCC---AGCA-GAGGc -5'
16156 5' -58 NC_004065.1 + 99973 0.67 0.894761
Target:  5'- -gCGGCgUGCUcgGGCCGcgggucGUCGUCUUCGu -3'
miRNA:   3'- gaGCUGgAUGA--CCGGC------CAGCAGAGGC- -5'
16156 5' -58 NC_004065.1 + 80972 0.67 0.894761
Target:  5'- aUCGGCCUGCc-GCCGccGUCGUCgcCCGc -3'
miRNA:   3'- gAGCUGGAUGacCGGC--CAGCAGa-GGC- -5'
16156 5' -58 NC_004065.1 + 132875 0.67 0.875084
Target:  5'- aUCGGCUUGCgcggccagagGGUCGccuuGUCGUCUCUGu -3'
miRNA:   3'- gAGCUGGAUGa---------CCGGC----CAGCAGAGGC- -5'
16156 5' -58 NC_004065.1 + 96970 0.67 0.875084
Target:  5'- -cCGcGCCUGCUGcGCCGGcCGUCcgUCGc -3'
miRNA:   3'- gaGC-UGGAUGAC-CGGCCaGCAGa-GGC- -5'
16156 5' -58 NC_004065.1 + 146745 0.67 0.875084
Target:  5'- gUCGGCCgccGCgaGGCCGGUCGaguacuUCUUCc -3'
miRNA:   3'- gAGCUGGa--UGa-CCGGCCAGC------AGAGGc -5'
16156 5' -58 NC_004065.1 + 161031 0.67 0.875084
Target:  5'- aUCGACgUGCaggGGCCGGUCGacgcuaUCUaUCGg -3'
miRNA:   3'- gAGCUGgAUGa--CCGGCCAGC------AGA-GGC- -5'
16156 5' -58 NC_004065.1 + 19201 0.67 0.867422
Target:  5'- -cCGGCCgcuCUGcGCgagccggUGGUCGUCUCCa -3'
miRNA:   3'- gaGCUGGau-GAC-CG-------GCCAGCAGAGGc -5'
16156 5' -58 NC_004065.1 + 131231 0.68 0.860982
Target:  5'- gUCGAUgUcggGGUcuCGGUCGUCUCCGu -3'
miRNA:   3'- gAGCUGgAugaCCG--GCCAGCAGAGGC- -5'
16156 5' -58 NC_004065.1 + 172178 0.68 0.838449
Target:  5'- uCUgGGCgaACcgucGUCGGUCGUCUCCGg -3'
miRNA:   3'- -GAgCUGgaUGac--CGGCCAGCAGAGGC- -5'
16156 5' -58 NC_004065.1 + 116284 0.68 0.830592
Target:  5'- cCUCGGCCUcCUcGCCGGaguUCUCCGa -3'
miRNA:   3'- -GAGCUGGAuGAcCGGCCagcAGAGGC- -5'
16156 5' -58 NC_004065.1 + 59397 0.69 0.803549
Target:  5'- uCUCGGCCU-CUGgucacgucccugacGCCGGccaaUGUCUCCGa -3'
miRNA:   3'- -GAGCUGGAuGAC--------------CGGCCa---GCAGAGGC- -5'
16156 5' -58 NC_004065.1 + 18299 0.69 0.797608
Target:  5'- gUCGAgCgGCUGGaCGGUCcGUCUUCGg -3'
miRNA:   3'- gAGCUgGaUGACCgGCCAG-CAGAGGC- -5'
16156 5' -58 NC_004065.1 + 82613 0.69 0.789008
Target:  5'- gUCGugCUGCUGGaCgCGGUUGcgUCCGg -3'
miRNA:   3'- gAGCugGAUGACC-G-GCCAGCagAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.