miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16159 3' -53.5 NC_004065.1 + 31645 0.66 0.984941
Target:  5'- cGCCGggcuacgggACGUCGGCGcuguUCCUGGc -3'
miRNA:   3'- uUGGCaua------UGUAGCCGCcu--AGGACCu -5'
16159 3' -53.5 NC_004065.1 + 65347 0.66 0.983114
Target:  5'- cAGCUGcggGUGgGUCGGuCGGAUcgaCCUGGGc -3'
miRNA:   3'- -UUGGCa--UAUgUAGCC-GCCUA---GGACCU- -5'
16159 3' -53.5 NC_004065.1 + 8752 0.66 0.983114
Target:  5'- aGGCCGUGgugg-CGGCGGcaggguucauAUCCUGGc -3'
miRNA:   3'- -UUGGCAUauguaGCCGCC----------UAGGACCu -5'
16159 3' -53.5 NC_004065.1 + 202921 0.66 0.981124
Target:  5'- cAUCGUcguCGUUGGCguucgGGGUCCUGGGg -3'
miRNA:   3'- uUGGCAuauGUAGCCG-----CCUAGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 109888 0.67 0.978963
Target:  5'- cGCCGcggccGCGUCGGgGGGUCCcGGc -3'
miRNA:   3'- uUGGCaua--UGUAGCCgCCUAGGaCCu -5'
16159 3' -53.5 NC_004065.1 + 73954 0.67 0.978963
Target:  5'- cAGCCGagacagGCGUCGGCGaGGUCgaGGu -3'
miRNA:   3'- -UUGGCaua---UGUAGCCGC-CUAGgaCCu -5'
16159 3' -53.5 NC_004065.1 + 67269 0.68 0.946491
Target:  5'- cGGCCGUucaacgGCA-CGGCGGAgacgcaggaCCUGGGg -3'
miRNA:   3'- -UUGGCAua----UGUaGCCGCCUa--------GGACCU- -5'
16159 3' -53.5 NC_004065.1 + 181226 0.68 0.946491
Target:  5'- cGGCCGgcUGCGU-GGaCGGGaCCUGGAc -3'
miRNA:   3'- -UUGGCauAUGUAgCC-GCCUaGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 19416 0.7 0.916251
Target:  5'- cGCCG---GCGUCGGCGGAggugCC-GGAg -3'
miRNA:   3'- uUGGCauaUGUAGCCGCCUa---GGaCCU- -5'
16159 3' -53.5 NC_004065.1 + 220288 0.7 0.897955
Target:  5'- cGCC-UGUACAgguaccUGGCGGuGUCCUGGAg -3'
miRNA:   3'- uUGGcAUAUGUa-----GCCGCC-UAGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 67121 0.71 0.862947
Target:  5'- cGCCGUGcuggACAgCGGCGcGcgCCUGGAc -3'
miRNA:   3'- uUGGCAUa---UGUaGCCGC-CuaGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 69329 0.72 0.83038
Target:  5'- cAUCGUGUuCGUCGGCGGGaaacccgUCUUGGGu -3'
miRNA:   3'- uUGGCAUAuGUAGCCGCCU-------AGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 142711 0.76 0.640429
Target:  5'- gGACCG---GCGUCGG-GGGUCCUGGGc -3'
miRNA:   3'- -UUGGCauaUGUAGCCgCCUAGGACCU- -5'
16159 3' -53.5 NC_004065.1 + 153313 1.07 0.009471
Target:  5'- gAACCGUAUACAUCGGCGGAUCCUGGAg -3'
miRNA:   3'- -UUGGCAUAUGUAGCCGCCUAGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.