Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16159 | 3' | -53.5 | NC_004065.1 | + | 31645 | 0.66 | 0.984941 |
Target: 5'- cGCCGggcuacgggACGUCGGCGcuguUCCUGGc -3' miRNA: 3'- uUGGCaua------UGUAGCCGCcu--AGGACCu -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 65347 | 0.66 | 0.983114 |
Target: 5'- cAGCUGcggGUGgGUCGGuCGGAUcgaCCUGGGc -3' miRNA: 3'- -UUGGCa--UAUgUAGCC-GCCUA---GGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 8752 | 0.66 | 0.983114 |
Target: 5'- aGGCCGUGgugg-CGGCGGcaggguucauAUCCUGGc -3' miRNA: 3'- -UUGGCAUauguaGCCGCC----------UAGGACCu -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 202921 | 0.66 | 0.981124 |
Target: 5'- cAUCGUcguCGUUGGCguucgGGGUCCUGGGg -3' miRNA: 3'- uUGGCAuauGUAGCCG-----CCUAGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 109888 | 0.67 | 0.978963 |
Target: 5'- cGCCGcggccGCGUCGGgGGGUCCcGGc -3' miRNA: 3'- uUGGCaua--UGUAGCCgCCUAGGaCCu -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 73954 | 0.67 | 0.978963 |
Target: 5'- cAGCCGagacagGCGUCGGCGaGGUCgaGGu -3' miRNA: 3'- -UUGGCaua---UGUAGCCGC-CUAGgaCCu -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 67269 | 0.68 | 0.946491 |
Target: 5'- cGGCCGUucaacgGCA-CGGCGGAgacgcaggaCCUGGGg -3' miRNA: 3'- -UUGGCAua----UGUaGCCGCCUa--------GGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 181226 | 0.68 | 0.946491 |
Target: 5'- cGGCCGgcUGCGU-GGaCGGGaCCUGGAc -3' miRNA: 3'- -UUGGCauAUGUAgCC-GCCUaGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 19416 | 0.7 | 0.916251 |
Target: 5'- cGCCG---GCGUCGGCGGAggugCC-GGAg -3' miRNA: 3'- uUGGCauaUGUAGCCGCCUa---GGaCCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 220288 | 0.7 | 0.897955 |
Target: 5'- cGCC-UGUACAgguaccUGGCGGuGUCCUGGAg -3' miRNA: 3'- uUGGcAUAUGUa-----GCCGCC-UAGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 67121 | 0.71 | 0.862947 |
Target: 5'- cGCCGUGcuggACAgCGGCGcGcgCCUGGAc -3' miRNA: 3'- uUGGCAUa---UGUaGCCGC-CuaGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 69329 | 0.72 | 0.83038 |
Target: 5'- cAUCGUGUuCGUCGGCGGGaaacccgUCUUGGGu -3' miRNA: 3'- uUGGCAUAuGUAGCCGCCU-------AGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 142711 | 0.76 | 0.640429 |
Target: 5'- gGACCG---GCGUCGG-GGGUCCUGGGc -3' miRNA: 3'- -UUGGCauaUGUAGCCgCCUAGGACCU- -5' |
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16159 | 3' | -53.5 | NC_004065.1 | + | 153313 | 1.07 | 0.009471 |
Target: 5'- gAACCGUAUACAUCGGCGGAUCCUGGAg -3' miRNA: 3'- -UUGGCAUAUGUAGCCGCCUAGGACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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