Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1616 | 3' | -61 | NC_001347.2 | + | 144706 | 0.98 | 0.009391 |
Target: 5'- uUGGU-GACGCGCGCUCCCGCAUCCACa -3' miRNA: 3'- -ACCAcCUGCGCGCGAGGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 178454 | 0.83 | 0.098188 |
Target: 5'- cGGUGGAgGUGCGCUCCCaCGUCCGu -3' miRNA: 3'- aCCACCUgCGCGCGAGGGcGUAGGUg -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 5573 | 0.75 | 0.312732 |
Target: 5'- cGGUGGGgGCGUGC-CCCGCAgaccCCGg -3' miRNA: 3'- aCCACCUgCGCGCGaGGGCGUa---GGUg -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 158542 | 0.75 | 0.319567 |
Target: 5'- gUGGUGGuACGCGaCGUgacggUCCCGCGUCUccuGCg -3' miRNA: 3'- -ACCACC-UGCGC-GCG-----AGGGCGUAGG---UG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 156963 | 0.74 | 0.34729 |
Target: 5'- gUGGUGGcgaGCGCGCUCCgggccauCGCGaCCGCa -3' miRNA: 3'- -ACCACCug-CGCGCGAGG-------GCGUaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 171782 | 0.74 | 0.348023 |
Target: 5'- aUGGUGGGuagagaGCGCGCUggaaaaaCUGCGUCCGCu -3' miRNA: 3'- -ACCACCUg-----CGCGCGAg------GGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 165116 | 0.73 | 0.393998 |
Target: 5'- cGGUGGuCGuUGuCGCUgCCGUGUCCGCg -3' miRNA: 3'- aCCACCuGC-GC-GCGAgGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 110871 | 0.73 | 0.382924 |
Target: 5'- aGGUGGugGCGCGacacaauccguaCCCGCAcCUACg -3' miRNA: 3'- aCCACCugCGCGCga----------GGGCGUaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 52590 | 0.72 | 0.452358 |
Target: 5'- ---gGGACGCGUGCUCUCGCGcgCUGCc -3' miRNA: 3'- accaCCUGCGCGCGAGGGCGUa-GGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 154992 | 0.72 | 0.461077 |
Target: 5'- cGGUGGAuUGCGUGC-CgCCGCAcgugguuucuUCCGCa -3' miRNA: 3'- aCCACCU-GCGCGCGaG-GGCGU----------AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 100471 | 0.71 | 0.478775 |
Target: 5'- gUGGUaGGACaGCGCGCgCCCgGCGgucacggaUCCGCa -3' miRNA: 3'- -ACCA-CCUG-CGCGCGaGGG-CGU--------AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 102426 | 0.7 | 0.562034 |
Target: 5'- cGGUGcGGCGCGcCGCauaCCGCAUuuuuaCCGCg -3' miRNA: 3'- aCCAC-CUGCGC-GCGag-GGCGUA-----GGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 68333 | 0.7 | 0.543105 |
Target: 5'- aUGGUGaGCaGCGCGCUCUCauuGgGUCCGCu -3' miRNA: 3'- -ACCACcUG-CGCGCGAGGG---CgUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 39372 | 0.7 | 0.543105 |
Target: 5'- cGGUGGACGC-CGUggCCCgGCGUCguCg -3' miRNA: 3'- aCCACCUGCGcGCGa-GGG-CGUAGguG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 190892 | 0.69 | 0.623556 |
Target: 5'- aGGUGGccACGgugcccagcaguugGCGCUguUCCGCGUCCACg -3' miRNA: 3'- aCCACC--UGCg-------------CGCGA--GGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 149852 | 0.69 | 0.590739 |
Target: 5'- aGGUGGAcuCGCaGCGCUUCUGCAaguugCCuACg -3' miRNA: 3'- aCCACCU--GCG-CGCGAGGGCGUa----GG-UG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 88650 | 0.69 | 0.590739 |
Target: 5'- cGGcGGcCuGCGCaGCUUCgCGCAUCCACu -3' miRNA: 3'- aCCaCCuG-CGCG-CGAGG-GCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 2453 | 0.69 | 0.610021 |
Target: 5'- cGGccgcgcugGGACGCGCuGCaCCUGCAcCCGCg -3' miRNA: 3'- aCCa-------CCUGCGCG-CGaGGGCGUaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 1341 | 0.69 | 0.610021 |
Target: 5'- gGcGUGGGCGCGaCGgaCCUGCGUCaACu -3' miRNA: 3'- aC-CACCUGCGC-GCgaGGGCGUAGgUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 187972 | 0.69 | 0.619687 |
Target: 5'- --uUGGGCGCGCGCUCgCCGuCGUUgGa -3' miRNA: 3'- accACCUGCGCGCGAG-GGC-GUAGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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