miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 3' -61 NC_001347.2 + 187972 0.69 0.619687
Target:  5'- --uUGGGCGCGCGCUCgCCGuCGUUgGa -3'
miRNA:   3'- accACCUGCGCGCGAG-GGC-GUAGgUg -5'
1616 3' -61 NC_001347.2 + 1341 0.69 0.610021
Target:  5'- gGcGUGGGCGCGaCGgaCCUGCGUCaACu -3'
miRNA:   3'- aC-CACCUGCGC-GCgaGGGCGUAGgUG- -5'
1616 3' -61 NC_001347.2 + 2453 0.69 0.610021
Target:  5'- cGGccgcgcugGGACGCGCuGCaCCUGCAcCCGCg -3'
miRNA:   3'- aCCa-------CCUGCGCG-CGaGGGCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 149852 0.69 0.590739
Target:  5'- aGGUGGAcuCGCaGCGCUUCUGCAaguugCCuACg -3'
miRNA:   3'- aCCACCU--GCG-CGCGAGGGCGUa----GG-UG- -5'
1616 3' -61 NC_001347.2 + 88650 0.69 0.590739
Target:  5'- cGGcGGcCuGCGCaGCUUCgCGCAUCCACu -3'
miRNA:   3'- aCCaCCuG-CGCG-CGAGG-GCGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 102426 0.7 0.562034
Target:  5'- cGGUGcGGCGCGcCGCauaCCGCAUuuuuaCCGCg -3'
miRNA:   3'- aCCAC-CUGCGC-GCGag-GGCGUA-----GGUG- -5'
1616 3' -61 NC_001347.2 + 39372 0.7 0.543105
Target:  5'- cGGUGGACGC-CGUggCCCgGCGUCguCg -3'
miRNA:   3'- aCCACCUGCGcGCGa-GGG-CGUAGguG- -5'
1616 3' -61 NC_001347.2 + 68333 0.7 0.543105
Target:  5'- aUGGUGaGCaGCGCGCUCUCauuGgGUCCGCu -3'
miRNA:   3'- -ACCACcUG-CGCGCGAGGG---CgUAGGUG- -5'
1616 3' -61 NC_001347.2 + 100471 0.71 0.478775
Target:  5'- gUGGUaGGACaGCGCGCgCCCgGCGgucacggaUCCGCa -3'
miRNA:   3'- -ACCA-CCUG-CGCGCGaGGG-CGU--------AGGUG- -5'
1616 3' -61 NC_001347.2 + 154992 0.72 0.461077
Target:  5'- cGGUGGAuUGCGUGC-CgCCGCAcgugguuucuUCCGCa -3'
miRNA:   3'- aCCACCU-GCGCGCGaG-GGCGU----------AGGUG- -5'
1616 3' -61 NC_001347.2 + 52590 0.72 0.452358
Target:  5'- ---gGGACGCGUGCUCUCGCGcgCUGCc -3'
miRNA:   3'- accaCCUGCGCGCGAGGGCGUa-GGUG- -5'
1616 3' -61 NC_001347.2 + 165116 0.73 0.393998
Target:  5'- cGGUGGuCGuUGuCGCUgCCGUGUCCGCg -3'
miRNA:   3'- aCCACCuGC-GC-GCGAgGGCGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 110871 0.73 0.382924
Target:  5'- aGGUGGugGCGCGacacaauccguaCCCGCAcCUACg -3'
miRNA:   3'- aCCACCugCGCGCga----------GGGCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 171782 0.74 0.348023
Target:  5'- aUGGUGGGuagagaGCGCGCUggaaaaaCUGCGUCCGCu -3'
miRNA:   3'- -ACCACCUg-----CGCGCGAg------GGCGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 156963 0.74 0.34729
Target:  5'- gUGGUGGcgaGCGCGCUCCgggccauCGCGaCCGCa -3'
miRNA:   3'- -ACCACCug-CGCGCGAGG-------GCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 158542 0.75 0.319567
Target:  5'- gUGGUGGuACGCGaCGUgacggUCCCGCGUCUccuGCg -3'
miRNA:   3'- -ACCACC-UGCGC-GCG-----AGGGCGUAGG---UG- -5'
1616 3' -61 NC_001347.2 + 5573 0.75 0.312732
Target:  5'- cGGUGGGgGCGUGC-CCCGCAgaccCCGg -3'
miRNA:   3'- aCCACCUgCGCGCGaGGGCGUa---GGUg -5'
1616 3' -61 NC_001347.2 + 178454 0.83 0.098188
Target:  5'- cGGUGGAgGUGCGCUCCCaCGUCCGu -3'
miRNA:   3'- aCCACCUgCGCGCGAGGGcGUAGGUg -5'
1616 3' -61 NC_001347.2 + 144706 0.98 0.009391
Target:  5'- uUGGU-GACGCGCGCUCCCGCAUCCACa -3'
miRNA:   3'- -ACCAcCUGCGCGCGAGGGCGUAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.