miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 3' -61 NC_001347.2 + 1341 0.69 0.610021
Target:  5'- gGcGUGGGCGCGaCGgaCCUGCGUCaACu -3'
miRNA:   3'- aC-CACCUGCGC-GCgaGGGCGUAGgUG- -5'
1616 3' -61 NC_001347.2 + 2453 0.69 0.610021
Target:  5'- cGGccgcgcugGGACGCGCuGCaCCUGCAcCCGCg -3'
miRNA:   3'- aCCa-------CCUGCGCG-CGaGGGCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 5573 0.75 0.312732
Target:  5'- cGGUGGGgGCGUGC-CCCGCAgaccCCGg -3'
miRNA:   3'- aCCACCUgCGCGCGaGGGCGUa---GGUg -5'
1616 3' -61 NC_001347.2 + 12631 0.66 0.796799
Target:  5'- gUGGUGGGCGaauCGCuaccCUCCgGCGUCUuucACg -3'
miRNA:   3'- -ACCACCUGC---GCGc---GAGGgCGUAGG---UG- -5'
1616 3' -61 NC_001347.2 + 20029 0.66 0.788216
Target:  5'- -cGUGGAauuacaGCGUUCCCuauugacgggcGCAUCCACg -3'
miRNA:   3'- acCACCUgcg---CGCGAGGG-----------CGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 26055 0.66 0.805248
Target:  5'- ---cGGGCGCuGCGgUCCCGaCAuggagacaguuUCCACg -3'
miRNA:   3'- accaCCUGCG-CGCgAGGGC-GU-----------AGGUG- -5'
1616 3' -61 NC_001347.2 + 35690 0.68 0.647742
Target:  5'- cGG-GGAaGaCGCGCUCCgGCccuggaaGUCCACg -3'
miRNA:   3'- aCCaCCUgC-GCGCGAGGgCG-------UAGGUG- -5'
1616 3' -61 NC_001347.2 + 39372 0.7 0.543105
Target:  5'- cGGUGGACGC-CGUggCCCgGCGUCguCg -3'
miRNA:   3'- aCCACCUGCGcGCGa-GGG-CGUAGguG- -5'
1616 3' -61 NC_001347.2 + 52590 0.72 0.452358
Target:  5'- ---gGGACGCGUGCUCUCGCGcgCUGCc -3'
miRNA:   3'- accaCCUGCGCGCGAGGGCGUa-GGUG- -5'
1616 3' -61 NC_001347.2 + 61253 0.66 0.805248
Target:  5'- aGGU-GACGCGaC-CUCCUGCcacauauagcucGUCCACa -3'
miRNA:   3'- aCCAcCUGCGC-GcGAGGGCG------------UAGGUG- -5'
1616 3' -61 NC_001347.2 + 63594 0.66 0.761744
Target:  5'- cGGUGGuGC-CGCGCUCUacuuCGUA-CCACg -3'
miRNA:   3'- aCCACC-UGcGCGCGAGG----GCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 68032 0.67 0.74357
Target:  5'- gGaGUGcuGAcCGC-CGCUCCCGCcgCCGCc -3'
miRNA:   3'- aC-CAC--CU-GCGcGCGAGGGCGuaGGUG- -5'
1616 3' -61 NC_001347.2 + 68333 0.7 0.543105
Target:  5'- aUGGUGaGCaGCGCGCUCUCauuGgGUCCGCu -3'
miRNA:   3'- -ACCACcUG-CGCGCGAGGG---CgUAGGUG- -5'
1616 3' -61 NC_001347.2 + 84637 0.67 0.756332
Target:  5'- cGGUGGcUGC-CGCUacuacugucguuuccCCCGCAgCCACu -3'
miRNA:   3'- aCCACCuGCGcGCGA---------------GGGCGUaGGUG- -5'
1616 3' -61 NC_001347.2 + 88186 0.66 0.805248
Target:  5'- cGGcGGACGCaacGgGCgUuuGCGUCCACc -3'
miRNA:   3'- aCCaCCUGCG---CgCGaGggCGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 88650 0.69 0.590739
Target:  5'- cGGcGGcCuGCGCaGCUUCgCGCAUCCACu -3'
miRNA:   3'- aCCaCCuG-CGCG-CGAGG-GCGUAGGUG- -5'
1616 3' -61 NC_001347.2 + 91208 0.68 0.667046
Target:  5'- aGcUGGACGCGUugaccgaGCUCuaCCGCgAUCCGCa -3'
miRNA:   3'- aCcACCUGCGCG-------CGAG--GGCG-UAGGUG- -5'
1616 3' -61 NC_001347.2 + 93056 0.66 0.796799
Target:  5'- cGGUGcGAggacaacgcgcCGCGCGCacuUCCaCGCccaaAUCCACu -3'
miRNA:   3'- aCCAC-CU-----------GCGCGCG---AGG-GCG----UAGGUG- -5'
1616 3' -61 NC_001347.2 + 98247 0.66 0.761744
Target:  5'- cUGGUGGAucacuuCGCGCGUgugCgGCGUaCCGCu -3'
miRNA:   3'- -ACCACCU------GCGCGCGag-GgCGUA-GGUG- -5'
1616 3' -61 NC_001347.2 + 99595 0.66 0.796799
Target:  5'- cGGUGGAagacaGCGCGUgUCCGUucgCCGa -3'
miRNA:   3'- aCCACCUg----CGCGCGaGGGCGua-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.