Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1616 | 3' | -61 | NC_001347.2 | + | 202333 | 0.67 | 0.705292 |
Target: 5'- gGGUGGAgagggaagguCGCGcCGCcgcagcaUCCCGCAuagccUCUACa -3' miRNA: 3'- aCCACCU----------GCGC-GCG-------AGGGCGU-----AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 190892 | 0.69 | 0.623556 |
Target: 5'- aGGUGGccACGgugcccagcaguugGCGCUguUCCGCGUCCACg -3' miRNA: 3'- aCCACC--UGCg-------------CGCGA--GGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 187972 | 0.69 | 0.619687 |
Target: 5'- --uUGGGCGCGCGCUCgCCGuCGUUgGa -3' miRNA: 3'- accACCUGCGCGCGAG-GGC-GUAGgUg -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 178454 | 0.83 | 0.098188 |
Target: 5'- cGGUGGAgGUGCGCUCCCaCGUCCGu -3' miRNA: 3'- aCCACCUgCGCGCGAGGGcGUAGGUg -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 171782 | 0.74 | 0.348023 |
Target: 5'- aUGGUGGGuagagaGCGCGCUggaaaaaCUGCGUCCGCu -3' miRNA: 3'- -ACCACCUg-----CGCGCGAg------GGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 171733 | 0.68 | 0.645808 |
Target: 5'- cGGUGGuuuggggcaACGCGCGCUuggacgcgcuaaugUCgGCGUCCGa -3' miRNA: 3'- aCCACC---------UGCGCGCGA--------------GGgCGUAGGUg -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 165116 | 0.73 | 0.393998 |
Target: 5'- cGGUGGuCGuUGuCGCUgCCGUGUCCGCg -3' miRNA: 3'- aCCACCuGC-GC-GCGAgGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 158678 | 0.66 | 0.779507 |
Target: 5'- ---gGGGCGCGCGCUgguuaaacagaCCGCcugCCACg -3' miRNA: 3'- accaCCUGCGCGCGAg----------GGCGua-GGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 158542 | 0.75 | 0.319567 |
Target: 5'- gUGGUGGuACGCGaCGUgacggUCCCGCGUCUccuGCg -3' miRNA: 3'- -ACCACC-UGCGC-GCG-----AGGGCGUAGG---UG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 158176 | 0.67 | 0.74357 |
Target: 5'- --cUGGACGCGCGCUCgcugguggCCGUggucuGUCgGCa -3' miRNA: 3'- accACCUGCGCGCGAG--------GGCG-----UAGgUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 156963 | 0.74 | 0.34729 |
Target: 5'- gUGGUGGcgaGCGCGCUCCgggccauCGCGaCCGCa -3' miRNA: 3'- -ACCACCug-CGCGCGAGG-------GCGUaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 154992 | 0.72 | 0.461077 |
Target: 5'- cGGUGGAuUGCGUGC-CgCCGCAcgugguuucuUCCGCa -3' miRNA: 3'- aCCACCU-GCGCGCGaG-GGCGU----------AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 149852 | 0.69 | 0.590739 |
Target: 5'- aGGUGGAcuCGCaGCGCUUCUGCAaguugCCuACg -3' miRNA: 3'- aCCACCU--GCG-CGCGAGGGCGUa----GG-UG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 144706 | 0.98 | 0.009391 |
Target: 5'- uUGGU-GACGCGCGCUCCCGCAUCCACa -3' miRNA: 3'- -ACCAcCUGCGCGCGAGGGCGUAGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 136302 | 0.67 | 0.715675 |
Target: 5'- cGGcacgGGGCuCGCGCUCCCuagguGCggCCGCc -3' miRNA: 3'- aCCa---CCUGcGCGCGAGGG-----CGuaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 110871 | 0.73 | 0.382924 |
Target: 5'- aGGUGGugGCGCGacacaauccguaCCCGCAcCUACg -3' miRNA: 3'- aCCACCugCGCGCga----------GGGCGUaGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 108309 | 0.66 | 0.779507 |
Target: 5'- cGGUGcugccgcacgaGACGCGa-CUCCUGCAgacggguaUCCACg -3' miRNA: 3'- aCCAC-----------CUGCGCgcGAGGGCGU--------AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 102426 | 0.7 | 0.562034 |
Target: 5'- cGGUGcGGCGCGcCGCauaCCGCAUuuuuaCCGCg -3' miRNA: 3'- aCCAC-CUGCGC-GCGag-GGCGUA-----GGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 100471 | 0.71 | 0.478775 |
Target: 5'- gUGGUaGGACaGCGCGCgCCCgGCGgucacggaUCCGCa -3' miRNA: 3'- -ACCA-CCUG-CGCGCGaGGG-CGU--------AGGUG- -5' |
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1616 | 3' | -61 | NC_001347.2 | + | 99595 | 0.66 | 0.796799 |
Target: 5'- cGGUGGAagacaGCGCGUgUCCGUucgCCGa -3' miRNA: 3'- aCCACCUg----CGCGCGaGGGCGua-GGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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