miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 5' -53.8 NC_001347.2 + 193469 0.65 0.986455
Target:  5'- cAGGUGuuCGUGgaCGCGuacGGCGCcguguucGCCUACg -3'
miRNA:   3'- -UCCACuuGCAC--GCGU---UUGCG-------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 178454 0.65 0.986129
Target:  5'- cGGUGGAgGUGCGCucccacguccgucaGcACGCGCacaCUAUg -3'
miRNA:   3'- uCCACUUgCACGCG--------------UuUGCGCG---GAUG- -5'
1616 5' -53.8 NC_001347.2 + 96392 0.66 0.984943
Target:  5'- cGGcGGcCGUGCGCAu---CGCCUGCc -3'
miRNA:   3'- uCCaCUuGCACGCGUuugcGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 166737 0.66 0.983866
Target:  5'- cGGGUuGACGgugguguacagguuaUGCGCuacgGAGCGCGCCa-- -3'
miRNA:   3'- -UCCAcUUGC---------------ACGCG----UUUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 16796 0.66 0.983116
Target:  5'- aAGGUGuACGUGCGUcgcCGCuacgaacacgGUCUACg -3'
miRNA:   3'- -UCCACuUGCACGCGuuuGCG----------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 96191 0.66 0.983116
Target:  5'- cGGGcacGGGCGUG-GCGGccguAgGCGCCUACc -3'
miRNA:   3'- -UCCa--CUUGCACgCGUU----UgCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 187346 0.66 0.982924
Target:  5'- gAGGUGcguuGCGUggccgugGCGCGu-CGCGgCUACa -3'
miRNA:   3'- -UCCACu---UGCA-------CGCGUuuGCGCgGAUG- -5'
1616 5' -53.8 NC_001347.2 + 13956 0.66 0.978965
Target:  5'- gGGGUGGcgaaGCGggaGCGCuGAUGUaCCUGCa -3'
miRNA:   3'- -UCCACU----UGCa--CGCGuUUGCGcGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 153223 0.66 0.978965
Target:  5'- -cGUGcAGCGUgagGCGCGGGCGCGCg--- -3'
miRNA:   3'- ucCAC-UUGCA---CGCGUUUGCGCGgaug -5'
1616 5' -53.8 NC_001347.2 + 94106 0.66 0.976627
Target:  5'- cAGGUGua---GCGUcuGCGCGCCUGa -3'
miRNA:   3'- -UCCACuugcaCGCGuuUGCGCGGAUg -5'
1616 5' -53.8 NC_001347.2 + 16843 0.67 0.973309
Target:  5'- cAGGcugGAACGcaacggaggcUGCGUAcacaugggcgaggcGGCGCGUCUGCa -3'
miRNA:   3'- -UCCa--CUUGC----------ACGCGU--------------UUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 2447 0.67 0.971388
Target:  5'- uGG-GAGCGgccGCGCuggGACGCG-CUGCa -3'
miRNA:   3'- uCCaCUUGCa--CGCGu--UUGCGCgGAUG- -5'
1616 5' -53.8 NC_001347.2 + 78670 0.67 0.971388
Target:  5'- uGGaGGcCGUGCGCAAgGCGCGCg-ACg -3'
miRNA:   3'- uCCaCUuGCACGCGUU-UGCGCGgaUG- -5'
1616 5' -53.8 NC_001347.2 + 108011 0.67 0.968473
Target:  5'- cGGUGGugGUGUGUGAugGgGUgUGg -3'
miRNA:   3'- uCCACUugCACGCGUUugCgCGgAUg -5'
1616 5' -53.8 NC_001347.2 + 126557 0.67 0.967559
Target:  5'- cAGGUGGacacgcagaucaacGCGUucCGCGAacguGCGCGUCUGCc -3'
miRNA:   3'- -UCCACU--------------UGCAc-GCGUU----UGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 169 0.68 0.958109
Target:  5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3'
miRNA:   3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5'
1616 5' -53.8 NC_001347.2 + 229648 0.68 0.958109
Target:  5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3'
miRNA:   3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5'
1616 5' -53.8 NC_001347.2 + 100784 0.68 0.954708
Target:  5'- uGGGUGAG-GUugcaGCGCGAACGUGCaCggggACg -3'
miRNA:   3'- -UCCACUUgCA----CGCGUUUGCGCG-Ga---UG- -5'
1616 5' -53.8 NC_001347.2 + 85513 0.68 0.950716
Target:  5'- cGGcuUGAGCGgGCGC--GCGCGCUUGa -3'
miRNA:   3'- uCC--ACUUGCaCGCGuuUGCGCGGAUg -5'
1616 5' -53.8 NC_001347.2 + 88601 0.68 0.950716
Target:  5'- uGGGcgaccUGAGCGgcgGCgGCcuGCGCGgCCUGCa -3'
miRNA:   3'- -UCC-----ACUUGCa--CG-CGuuUGCGC-GGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.