Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1616 | 5' | -53.8 | NC_001347.2 | + | 85513 | 0.68 | 0.950716 |
Target: 5'- cGGcuUGAGCGgGCGC--GCGCGCUUGa -3' miRNA: 3'- uCC--ACUUGCaCGCGuuUGCGCGGAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 169 | 0.68 | 0.958109 |
Target: 5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3' miRNA: 3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 229648 | 0.68 | 0.958109 |
Target: 5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3' miRNA: 3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 1332 | 0.69 | 0.910391 |
Target: 5'- cAGaUGAACG-GCGUggGCGCGacggaCCUGCg -3' miRNA: 3'- -UCcACUUGCaCGCGuuUGCGC-----GGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 134993 | 0.69 | 0.910391 |
Target: 5'- cGG-GGACGUGCGUu--CGUGCCg-- -3' miRNA: 3'- uCCaCUUGCACGCGuuuGCGCGGaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 194543 | 0.69 | 0.912175 |
Target: 5'- uGG-GGugGUGCGCGAucacaagaccuaccgGCGCuucucguGCCUGCg -3' miRNA: 3'- uCCaCUugCACGCGUU---------------UGCG-------CGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 158368 | 0.69 | 0.916257 |
Target: 5'- cGGGUG---GUGCGgcAGCGCGUCUACg -3' miRNA: 3'- -UCCACuugCACGCguUUGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 77868 | 0.69 | 0.920222 |
Target: 5'- cAGGUGGccgagcgccugggcGcCGUGCGCGuagccAACGCGCCcgaggUACg -3' miRNA: 3'- -UCCACU--------------U-GCACGCGU-----UUGCGCGG-----AUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 142204 | 0.69 | 0.921887 |
Target: 5'- --cUGAGCGUGCGCGAGgagaucccCGCGUCcgACg -3' miRNA: 3'- uccACUUGCACGCGUUU--------GCGCGGa-UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 198379 | 0.69 | 0.92728 |
Target: 5'- cAGGUGggUGgcGCGCGGGuCGCGCa-ACa -3' miRNA: 3'- -UCCACuuGCa-CGCGUUU-GCGCGgaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 1629 | 0.69 | 0.92728 |
Target: 5'- cGGcUGGGCGUGgGCAccccGCGCGCgacgCUGCu -3' miRNA: 3'- uCC-ACUUGCACgCGUu---UGCGCG----GAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 82394 | 0.7 | 0.88939 |
Target: 5'- cGGcGUGAAgGUGCGCGccaacacgcggauuAACGCGCUg-- -3' miRNA: 3'- -UC-CACUUgCACGCGU--------------UUGCGCGGaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 23596 | 0.7 | 0.897961 |
Target: 5'- cGGUGAuCGUG-GCca--GCGCCUGCu -3' miRNA: 3'- uCCACUuGCACgCGuuugCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 229541 | 0.7 | 0.891402 |
Target: 5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3' miRNA: 3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 62 | 0.7 | 0.891402 |
Target: 5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3' miRNA: 3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 139475 | 0.7 | 0.897961 |
Target: 5'- cGGUGcGCGUGcCGUuguACcCGCCUACg -3' miRNA: 3'- uCCACuUGCAC-GCGuu-UGcGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 126386 | 0.7 | 0.904292 |
Target: 5'- gAGGaGuACGUGCGCAGcuucugcacGCGCGaCCUGg -3' miRNA: 3'- -UCCaCuUGCACGCGUU---------UGCGC-GGAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 183451 | 0.71 | 0.870388 |
Target: 5'- uAGGUGGugagGCGCGgauAGCGCGCCUcgGCc -3' miRNA: 3'- -UCCACUugcaCGCGU---UUGCGCGGA--UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 151508 | 0.72 | 0.796626 |
Target: 5'- gGGcGUGGAUcugGUGCGCaAGACG-GCCUGCg -3' miRNA: 3'- -UC-CACUUG---CACGCG-UUUGCgCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 41688 | 0.73 | 0.730772 |
Target: 5'- cGGUGAACGUgGCGCGugGAUGCcgGCCgagACa -3' miRNA: 3'- uCCACUUGCA-CGCGU--UUGCG--CGGa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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