Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1616 | 5' | -53.8 | NC_001347.2 | + | 144744 | 1.09 | 0.006619 |
Target: 5'- gAGGUGAACGUGCGCAAACGCGCCUACc -3' miRNA: 3'- -UCCACUUGCACGCGUUUGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 79612 | 0.78 | 0.500575 |
Target: 5'- cGGUGAACGUGCGCGAAaGCuucgGCCgGCu -3' miRNA: 3'- uCCACUUGCACGCGUUUgCG----CGGaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 78558 | 0.78 | 0.481549 |
Target: 5'- uGGGaGAaucGCGUGCGCGAacuGCGCGaCCUGCu -3' miRNA: 3'- -UCCaCU---UGCACGCGUU---UGCGC-GGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 111582 | 0.77 | 0.539561 |
Target: 5'- cGGUGAGCGUGCaGCAcGC-CGCaCUACg -3' miRNA: 3'- uCCACUUGCACG-CGUuUGcGCG-GAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 621 | 0.73 | 0.750146 |
Target: 5'- gAGGcGGcUGUGCGCuccagugguACGCGCCUGCc -3' miRNA: 3'- -UCCaCUuGCACGCGuu-------UGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 41688 | 0.73 | 0.730772 |
Target: 5'- cGGUGAACGUgGCGCGugGAUGCcgGCCgagACa -3' miRNA: 3'- uCCACUUGCA-CGCGU--UUGCG--CGGa--UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 171608 | 0.73 | 0.759683 |
Target: 5'- cGGUGAACGUGgcuCGCu-GCGUGUUUGCg -3' miRNA: 3'- uCCACUUGCAC---GCGuuUGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 174720 | 0.73 | 0.778414 |
Target: 5'- cAGGaGGGCcUGCGCAAcuACGCGCCgcUGCg -3' miRNA: 3'- -UCCaCUUGcACGCGUU--UGCGCGG--AUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 151508 | 0.72 | 0.796626 |
Target: 5'- gGGcGUGGAUcugGUGCGCaAGACG-GCCUGCg -3' miRNA: 3'- -UC-CACUUG---CACGCG-UUUGCgCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 183451 | 0.71 | 0.870388 |
Target: 5'- uAGGUGGugagGCGCGgauAGCGCGCCUcgGCc -3' miRNA: 3'- -UCCACUugcaCGCGU---UUGCGCGGA--UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 126386 | 0.7 | 0.904292 |
Target: 5'- gAGGaGuACGUGCGCAGcuucugcacGCGCGaCCUGg -3' miRNA: 3'- -UCCaCuUGCACGCGUU---------UGCGC-GGAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 82394 | 0.7 | 0.88939 |
Target: 5'- cGGcGUGAAgGUGCGCGccaacacgcggauuAACGCGCUg-- -3' miRNA: 3'- -UC-CACUUgCACGCGU--------------UUGCGCGGaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 23596 | 0.7 | 0.897961 |
Target: 5'- cGGUGAuCGUG-GCca--GCGCCUGCu -3' miRNA: 3'- uCCACUuGCACgCGuuugCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 229541 | 0.7 | 0.891402 |
Target: 5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3' miRNA: 3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 62 | 0.7 | 0.891402 |
Target: 5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3' miRNA: 3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 139475 | 0.7 | 0.897961 |
Target: 5'- cGGUGcGCGUGcCGUuguACcCGCCUACg -3' miRNA: 3'- uCCACuUGCAC-GCGuu-UGcGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 134993 | 0.69 | 0.910391 |
Target: 5'- cGG-GGACGUGCGUu--CGUGCCg-- -3' miRNA: 3'- uCCaCUUGCACGCGuuuGCGCGGaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 194543 | 0.69 | 0.912175 |
Target: 5'- uGG-GGugGUGCGCGAucacaagaccuaccgGCGCuucucguGCCUGCg -3' miRNA: 3'- uCCaCUugCACGCGUU---------------UGCG-------CGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 158368 | 0.69 | 0.916257 |
Target: 5'- cGGGUG---GUGCGgcAGCGCGUCUACg -3' miRNA: 3'- -UCCACuugCACGCguUUGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 77868 | 0.69 | 0.920222 |
Target: 5'- cAGGUGGccgagcgccugggcGcCGUGCGCGuagccAACGCGCCcgaggUACg -3' miRNA: 3'- -UCCACU--------------U-GCACGCGU-----UUGCGCGG-----AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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