Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1616 | 5' | -53.8 | NC_001347.2 | + | 77868 | 0.69 | 0.920222 |
Target: 5'- cAGGUGGccgagcgccugggcGcCGUGCGCGuagccAACGCGCCcgaggUACg -3' miRNA: 3'- -UCCACU--------------U-GCACGCGU-----UUGCGCGG-----AUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 142204 | 0.69 | 0.921887 |
Target: 5'- --cUGAGCGUGCGCGAGgagaucccCGCGUCcgACg -3' miRNA: 3'- uccACUUGCACGCGUUU--------GCGCGGa-UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 1629 | 0.69 | 0.92728 |
Target: 5'- cGGcUGGGCGUGgGCAccccGCGCGCgacgCUGCu -3' miRNA: 3'- uCC-ACUUGCACgCGUu---UGCGCG----GAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 198379 | 0.69 | 0.92728 |
Target: 5'- cAGGUGggUGgcGCGCGGGuCGCGCa-ACa -3' miRNA: 3'- -UCCACuuGCa-CGCGUUU-GCGCGgaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 228895 | 0.68 | 0.942044 |
Target: 5'- gAGGUGuuggcgggccUGUGCGCAAGCaGCGUaguCUGCg -3' miRNA: 3'- -UCCACuu--------GCACGCGUUUG-CGCG---GAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 48852 | 0.68 | 0.942044 |
Target: 5'- cGGUGcGGCGUucGCGUgcACGCGCCa-- -3' miRNA: 3'- uCCAC-UUGCA--CGCGuuUGCGCGGaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 95012 | 0.68 | 0.942044 |
Target: 5'- cAGGU--GCGUGCGaAAGCaGCGCgUGCa -3' miRNA: 3'- -UCCAcuUGCACGCgUUUG-CGCGgAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 88601 | 0.68 | 0.950716 |
Target: 5'- uGGGcgaccUGAGCGgcgGCgGCcuGCGCGgCCUGCa -3' miRNA: 3'- -UCC-----ACUUGCa--CG-CGuuUGCGC-GGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 85513 | 0.68 | 0.950716 |
Target: 5'- cGGcuUGAGCGgGCGC--GCGCGCUUGa -3' miRNA: 3'- uCC--ACUUGCaCGCGuuUGCGCGGAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 100784 | 0.68 | 0.954708 |
Target: 5'- uGGGUGAG-GUugcaGCGCGAACGUGCaCggggACg -3' miRNA: 3'- -UCCACUUgCA----CGCGUUUGCGCG-Ga---UG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 229648 | 0.68 | 0.958109 |
Target: 5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3' miRNA: 3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 169 | 0.68 | 0.958109 |
Target: 5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3' miRNA: 3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 126557 | 0.67 | 0.967559 |
Target: 5'- cAGGUGGacacgcagaucaacGCGUucCGCGAacguGCGCGUCUGCc -3' miRNA: 3'- -UCCACU--------------UGCAc-GCGUU----UGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 108011 | 0.67 | 0.968473 |
Target: 5'- cGGUGGugGUGUGUGAugGgGUgUGg -3' miRNA: 3'- uCCACUugCACGCGUUugCgCGgAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 2447 | 0.67 | 0.971388 |
Target: 5'- uGG-GAGCGgccGCGCuggGACGCG-CUGCa -3' miRNA: 3'- uCCaCUUGCa--CGCGu--UUGCGCgGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 78670 | 0.67 | 0.971388 |
Target: 5'- uGGaGGcCGUGCGCAAgGCGCGCg-ACg -3' miRNA: 3'- uCCaCUuGCACGCGUU-UGCGCGgaUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 16843 | 0.67 | 0.973309 |
Target: 5'- cAGGcugGAACGcaacggaggcUGCGUAcacaugggcgaggcGGCGCGUCUGCa -3' miRNA: 3'- -UCCa--CUUGC----------ACGCGU--------------UUGCGCGGAUG- -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 94106 | 0.66 | 0.976627 |
Target: 5'- cAGGUGua---GCGUcuGCGCGCCUGa -3' miRNA: 3'- -UCCACuugcaCGCGuuUGCGCGGAUg -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 153223 | 0.66 | 0.978965 |
Target: 5'- -cGUGcAGCGUgagGCGCGGGCGCGCg--- -3' miRNA: 3'- ucCAC-UUGCA---CGCGUUUGCGCGgaug -5' |
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1616 | 5' | -53.8 | NC_001347.2 | + | 13956 | 0.66 | 0.978965 |
Target: 5'- gGGGUGGcgaaGCGggaGCGCuGAUGUaCCUGCa -3' miRNA: 3'- -UCCACU----UGCa--CGCGuUUGCGcGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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