Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1616 | 5' | -53.8 | NC_001347.2 | + | 187346 | 0.66 | 0.982924 |
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Target: 5'- gAGGUGcguuGCGUggccgugGCGCGu-CGCGgCUACa -3' miRNA: 3'- -UCCACu---UGCA-------CGCGUuuGCGCgGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 96191 | 0.66 | 0.983116 |
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Target: 5'- cGGGcacGGGCGUG-GCGGccguAgGCGCCUACc -3' miRNA: 3'- -UCCa--CUUGCACgCGUU----UgCGCGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 16796 | 0.66 | 0.983116 |
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Target: 5'- aAGGUGuACGUGCGUcgcCGCuacgaacacgGUCUACg -3' miRNA: 3'- -UCCACuUGCACGCGuuuGCG----------CGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 166737 | 0.66 | 0.983866 |
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Target: 5'- cGGGUuGACGgugguguacagguuaUGCGCuacgGAGCGCGCCa-- -3' miRNA: 3'- -UCCAcUUGC---------------ACGCG----UUUGCGCGGaug -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 96392 | 0.66 | 0.984943 |
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Target: 5'- cGGcGGcCGUGCGCAu---CGCCUGCc -3' miRNA: 3'- uCCaCUuGCACGCGUuugcGCGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 178454 | 0.65 | 0.986129 |
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Target: 5'- cGGUGGAgGUGCGCucccacguccgucaGcACGCGCacaCUAUg -3' miRNA: 3'- uCCACUUgCACGCG--------------UuUGCGCG---GAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 193469 | 0.65 | 0.986455 |
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Target: 5'- cAGGUGuuCGUGgaCGCGuacGGCGCcguguucGCCUACg -3' miRNA: 3'- -UCCACuuGCAC--GCGU---UUGCG-------CGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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