miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 5' -53.8 NC_001347.2 + 228895 0.68 0.942044
Target:  5'- gAGGUGuuggcgggccUGUGCGCAAGCaGCGUaguCUGCg -3'
miRNA:   3'- -UCCACuu--------GCACGCGUUUG-CGCG---GAUG- -5'
1616 5' -53.8 NC_001347.2 + 48852 0.68 0.942044
Target:  5'- cGGUGcGGCGUucGCGUgcACGCGCCa-- -3'
miRNA:   3'- uCCAC-UUGCA--CGCGuuUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 95012 0.68 0.942044
Target:  5'- cAGGU--GCGUGCGaAAGCaGCGCgUGCa -3'
miRNA:   3'- -UCCAcuUGCACGCgUUUG-CGCGgAUG- -5'
1616 5' -53.8 NC_001347.2 + 1629 0.69 0.92728
Target:  5'- cGGcUGGGCGUGgGCAccccGCGCGCgacgCUGCu -3'
miRNA:   3'- uCC-ACUUGCACgCGUu---UGCGCG----GAUG- -5'
1616 5' -53.8 NC_001347.2 + 198379 0.69 0.92728
Target:  5'- cAGGUGggUGgcGCGCGGGuCGCGCa-ACa -3'
miRNA:   3'- -UCCACuuGCa-CGCGUUU-GCGCGgaUG- -5'
1616 5' -53.8 NC_001347.2 + 142204 0.69 0.921887
Target:  5'- --cUGAGCGUGCGCGAGgagaucccCGCGUCcgACg -3'
miRNA:   3'- uccACUUGCACGCGUUU--------GCGCGGa-UG- -5'
1616 5' -53.8 NC_001347.2 + 77868 0.69 0.920222
Target:  5'- cAGGUGGccgagcgccugggcGcCGUGCGCGuagccAACGCGCCcgaggUACg -3'
miRNA:   3'- -UCCACU--------------U-GCACGCGU-----UUGCGCGG-----AUG- -5'
1616 5' -53.8 NC_001347.2 + 158368 0.69 0.916257
Target:  5'- cGGGUG---GUGCGgcAGCGCGUCUACg -3'
miRNA:   3'- -UCCACuugCACGCguUUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 194543 0.69 0.912175
Target:  5'- uGG-GGugGUGCGCGAucacaagaccuaccgGCGCuucucguGCCUGCg -3'
miRNA:   3'- uCCaCUugCACGCGUU---------------UGCG-------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 134993 0.69 0.910391
Target:  5'- cGG-GGACGUGCGUu--CGUGCCg-- -3'
miRNA:   3'- uCCaCUUGCACGCGuuuGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 1332 0.69 0.910391
Target:  5'- cAGaUGAACG-GCGUggGCGCGacggaCCUGCg -3'
miRNA:   3'- -UCcACUUGCaCGCGuuUGCGC-----GGAUG- -5'
1616 5' -53.8 NC_001347.2 + 126386 0.7 0.904292
Target:  5'- gAGGaGuACGUGCGCAGcuucugcacGCGCGaCCUGg -3'
miRNA:   3'- -UCCaCuUGCACGCGUU---------UGCGC-GGAUg -5'
1616 5' -53.8 NC_001347.2 + 139475 0.7 0.897961
Target:  5'- cGGUGcGCGUGcCGUuguACcCGCCUACg -3'
miRNA:   3'- uCCACuUGCAC-GCGuu-UGcGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 23596 0.7 0.897961
Target:  5'- cGGUGAuCGUG-GCca--GCGCCUGCu -3'
miRNA:   3'- uCCACUuGCACgCGuuugCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 62 0.7 0.891402
Target:  5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3'
miRNA:   3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5'
1616 5' -53.8 NC_001347.2 + 229541 0.7 0.891402
Target:  5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3'
miRNA:   3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5'
1616 5' -53.8 NC_001347.2 + 82394 0.7 0.88939
Target:  5'- cGGcGUGAAgGUGCGCGccaacacgcggauuAACGCGCUg-- -3'
miRNA:   3'- -UC-CACUUgCACGCGU--------------UUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 183451 0.71 0.870388
Target:  5'- uAGGUGGugagGCGCGgauAGCGCGCCUcgGCc -3'
miRNA:   3'- -UCCACUugcaCGCGU---UUGCGCGGA--UG- -5'
1616 5' -53.8 NC_001347.2 + 151508 0.72 0.796626
Target:  5'- gGGcGUGGAUcugGUGCGCaAGACG-GCCUGCg -3'
miRNA:   3'- -UC-CACUUG---CACGCG-UUUGCgCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 174720 0.73 0.778414
Target:  5'- cAGGaGGGCcUGCGCAAcuACGCGCCgcUGCg -3'
miRNA:   3'- -UCCaCUUGcACGCGUU--UGCGCGG--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.