Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1616 | 5' | -53.8 | NC_001347.2 | + | 171608 | 0.73 | 0.759683 |
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Target: 5'- cGGUGAACGUGgcuCGCu-GCGUGUUUGCg -3' miRNA: 3'- uCCACUUGCAC---GCGuuUGCGCGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 621 | 0.73 | 0.750146 |
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Target: 5'- gAGGcGGcUGUGCGCuccagugguACGCGCCUGCc -3' miRNA: 3'- -UCCaCUuGCACGCGuu-------UGCGCGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 41688 | 0.73 | 0.730772 |
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Target: 5'- cGGUGAACGUgGCGCGugGAUGCcgGCCgagACa -3' miRNA: 3'- uCCACUUGCA-CGCGU--UUGCG--CGGa--UG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 111582 | 0.77 | 0.539561 |
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Target: 5'- cGGUGAGCGUGCaGCAcGC-CGCaCUACg -3' miRNA: 3'- uCCACUUGCACG-CGUuUGcGCG-GAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 79612 | 0.78 | 0.500575 |
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Target: 5'- cGGUGAACGUGCGCGAAaGCuucgGCCgGCu -3' miRNA: 3'- uCCACUUGCACGCGUUUgCG----CGGaUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 78558 | 0.78 | 0.481549 |
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Target: 5'- uGGGaGAaucGCGUGCGCGAacuGCGCGaCCUGCu -3' miRNA: 3'- -UCCaCU---UGCACGCGUU---UGCGC-GGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 144744 | 1.09 | 0.006619 |
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Target: 5'- gAGGUGAACGUGCGCAAACGCGCCUACc -3' miRNA: 3'- -UCCACUUGCACGCGUUUGCGCGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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