miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 5' -53.8 NC_001347.2 + 62 0.7 0.891402
Target:  5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3'
miRNA:   3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5'
1616 5' -53.8 NC_001347.2 + 169 0.68 0.958109
Target:  5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3'
miRNA:   3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5'
1616 5' -53.8 NC_001347.2 + 621 0.73 0.750146
Target:  5'- gAGGcGGcUGUGCGCuccagugguACGCGCCUGCc -3'
miRNA:   3'- -UCCaCUuGCACGCGuu-------UGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 1332 0.69 0.910391
Target:  5'- cAGaUGAACG-GCGUggGCGCGacggaCCUGCg -3'
miRNA:   3'- -UCcACUUGCaCGCGuuUGCGC-----GGAUG- -5'
1616 5' -53.8 NC_001347.2 + 1629 0.69 0.92728
Target:  5'- cGGcUGGGCGUGgGCAccccGCGCGCgacgCUGCu -3'
miRNA:   3'- uCC-ACUUGCACgCGUu---UGCGCG----GAUG- -5'
1616 5' -53.8 NC_001347.2 + 2447 0.67 0.971388
Target:  5'- uGG-GAGCGgccGCGCuggGACGCG-CUGCa -3'
miRNA:   3'- uCCaCUUGCa--CGCGu--UUGCGCgGAUG- -5'
1616 5' -53.8 NC_001347.2 + 13956 0.66 0.978965
Target:  5'- gGGGUGGcgaaGCGggaGCGCuGAUGUaCCUGCa -3'
miRNA:   3'- -UCCACU----UGCa--CGCGuUUGCGcGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 16796 0.66 0.983116
Target:  5'- aAGGUGuACGUGCGUcgcCGCuacgaacacgGUCUACg -3'
miRNA:   3'- -UCCACuUGCACGCGuuuGCG----------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 16843 0.67 0.973309
Target:  5'- cAGGcugGAACGcaacggaggcUGCGUAcacaugggcgaggcGGCGCGUCUGCa -3'
miRNA:   3'- -UCCa--CUUGC----------ACGCGU--------------UUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 23596 0.7 0.897961
Target:  5'- cGGUGAuCGUG-GCca--GCGCCUGCu -3'
miRNA:   3'- uCCACUuGCACgCGuuugCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 41688 0.73 0.730772
Target:  5'- cGGUGAACGUgGCGCGugGAUGCcgGCCgagACa -3'
miRNA:   3'- uCCACUUGCA-CGCGU--UUGCG--CGGa--UG- -5'
1616 5' -53.8 NC_001347.2 + 48852 0.68 0.942044
Target:  5'- cGGUGcGGCGUucGCGUgcACGCGCCa-- -3'
miRNA:   3'- uCCAC-UUGCA--CGCGuuUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 77868 0.69 0.920222
Target:  5'- cAGGUGGccgagcgccugggcGcCGUGCGCGuagccAACGCGCCcgaggUACg -3'
miRNA:   3'- -UCCACU--------------U-GCACGCGU-----UUGCGCGG-----AUG- -5'
1616 5' -53.8 NC_001347.2 + 78558 0.78 0.481549
Target:  5'- uGGGaGAaucGCGUGCGCGAacuGCGCGaCCUGCu -3'
miRNA:   3'- -UCCaCU---UGCACGCGUU---UGCGC-GGAUG- -5'
1616 5' -53.8 NC_001347.2 + 78670 0.67 0.971388
Target:  5'- uGGaGGcCGUGCGCAAgGCGCGCg-ACg -3'
miRNA:   3'- uCCaCUuGCACGCGUU-UGCGCGgaUG- -5'
1616 5' -53.8 NC_001347.2 + 79612 0.78 0.500575
Target:  5'- cGGUGAACGUGCGCGAAaGCuucgGCCgGCu -3'
miRNA:   3'- uCCACUUGCACGCGUUUgCG----CGGaUG- -5'
1616 5' -53.8 NC_001347.2 + 82394 0.7 0.88939
Target:  5'- cGGcGUGAAgGUGCGCGccaacacgcggauuAACGCGCUg-- -3'
miRNA:   3'- -UC-CACUUgCACGCGU--------------UUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 85513 0.68 0.950716
Target:  5'- cGGcuUGAGCGgGCGC--GCGCGCUUGa -3'
miRNA:   3'- uCC--ACUUGCaCGCGuuUGCGCGGAUg -5'
1616 5' -53.8 NC_001347.2 + 88601 0.68 0.950716
Target:  5'- uGGGcgaccUGAGCGgcgGCgGCcuGCGCGgCCUGCa -3'
miRNA:   3'- -UCC-----ACUUGCa--CG-CGuuUGCGC-GGAUG- -5'
1616 5' -53.8 NC_001347.2 + 94106 0.66 0.976627
Target:  5'- cAGGUGua---GCGUcuGCGCGCCUGa -3'
miRNA:   3'- -UCCACuugcaCGCGuuUGCGCGGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.