Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1616 | 5' | -53.8 | NC_001347.2 | + | 187346 | 0.66 | 0.982924 |
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Target: 5'- gAGGUGcguuGCGUggccgugGCGCGu-CGCGgCUACa -3' miRNA: 3'- -UCCACu---UGCA-------CGCGUuuGCGCgGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 193469 | 0.65 | 0.986455 |
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Target: 5'- cAGGUGuuCGUGgaCGCGuacGGCGCcguguucGCCUACg -3' miRNA: 3'- -UCCACuuGCAC--GCGU---UUGCG-------CGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 194543 | 0.69 | 0.912175 |
|
Target: 5'- uGG-GGugGUGCGCGAucacaagaccuaccgGCGCuucucguGCCUGCg -3' miRNA: 3'- uCCaCUugCACGCGUU---------------UGCG-------CGGAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 198379 | 0.69 | 0.92728 |
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Target: 5'- cAGGUGggUGgcGCGCGGGuCGCGCa-ACa -3' miRNA: 3'- -UCCACuuGCa-CGCGUUU-GCGCGgaUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 228895 | 0.68 | 0.942044 |
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Target: 5'- gAGGUGuuggcgggccUGUGCGCAAGCaGCGUaguCUGCg -3' miRNA: 3'- -UCCACuu--------GCACGCGUUUG-CGCG---GAUG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 229541 | 0.7 | 0.891402 |
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Target: 5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3' miRNA: 3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5' |
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| 1616 | 5' | -53.8 | NC_001347.2 | + | 229648 | 0.68 | 0.958109 |
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Target: 5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3' miRNA: 3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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