miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1616 5' -53.8 NC_001347.2 + 229648 0.68 0.958109
Target:  5'- cGGGUGugucgcgGGCGUGUgGCGggUGUGCCgGCg -3'
miRNA:   3'- -UCCAC-------UUGCACG-CGUuuGCGCGGaUG- -5'
1616 5' -53.8 NC_001347.2 + 229541 0.7 0.891402
Target:  5'- cGGGUGggUGUGUGCcGggUGUGUCgcggGCg -3'
miRNA:   3'- -UCCACuuGCACGCG-UuuGCGCGGa---UG- -5'
1616 5' -53.8 NC_001347.2 + 228895 0.68 0.942044
Target:  5'- gAGGUGuuggcgggccUGUGCGCAAGCaGCGUaguCUGCg -3'
miRNA:   3'- -UCCACuu--------GCACGCGUUUG-CGCG---GAUG- -5'
1616 5' -53.8 NC_001347.2 + 198379 0.69 0.92728
Target:  5'- cAGGUGggUGgcGCGCGGGuCGCGCa-ACa -3'
miRNA:   3'- -UCCACuuGCa-CGCGUUU-GCGCGgaUG- -5'
1616 5' -53.8 NC_001347.2 + 194543 0.69 0.912175
Target:  5'- uGG-GGugGUGCGCGAucacaagaccuaccgGCGCuucucguGCCUGCg -3'
miRNA:   3'- uCCaCUugCACGCGUU---------------UGCG-------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 193469 0.65 0.986455
Target:  5'- cAGGUGuuCGUGgaCGCGuacGGCGCcguguucGCCUACg -3'
miRNA:   3'- -UCCACuuGCAC--GCGU---UUGCG-------CGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 187346 0.66 0.982924
Target:  5'- gAGGUGcguuGCGUggccgugGCGCGu-CGCGgCUACa -3'
miRNA:   3'- -UCCACu---UGCA-------CGCGUuuGCGCgGAUG- -5'
1616 5' -53.8 NC_001347.2 + 183451 0.71 0.870388
Target:  5'- uAGGUGGugagGCGCGgauAGCGCGCCUcgGCc -3'
miRNA:   3'- -UCCACUugcaCGCGU---UUGCGCGGA--UG- -5'
1616 5' -53.8 NC_001347.2 + 178454 0.65 0.986129
Target:  5'- cGGUGGAgGUGCGCucccacguccgucaGcACGCGCacaCUAUg -3'
miRNA:   3'- uCCACUUgCACGCG--------------UuUGCGCG---GAUG- -5'
1616 5' -53.8 NC_001347.2 + 174720 0.73 0.778414
Target:  5'- cAGGaGGGCcUGCGCAAcuACGCGCCgcUGCg -3'
miRNA:   3'- -UCCaCUUGcACGCGUU--UGCGCGG--AUG- -5'
1616 5' -53.8 NC_001347.2 + 171608 0.73 0.759683
Target:  5'- cGGUGAACGUGgcuCGCu-GCGUGUUUGCg -3'
miRNA:   3'- uCCACUUGCAC---GCGuuUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 166737 0.66 0.983866
Target:  5'- cGGGUuGACGgugguguacagguuaUGCGCuacgGAGCGCGCCa-- -3'
miRNA:   3'- -UCCAcUUGC---------------ACGCG----UUUGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 158368 0.69 0.916257
Target:  5'- cGGGUG---GUGCGgcAGCGCGUCUACg -3'
miRNA:   3'- -UCCACuugCACGCguUUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 153223 0.66 0.978965
Target:  5'- -cGUGcAGCGUgagGCGCGGGCGCGCg--- -3'
miRNA:   3'- ucCAC-UUGCA---CGCGUUUGCGCGgaug -5'
1616 5' -53.8 NC_001347.2 + 151508 0.72 0.796626
Target:  5'- gGGcGUGGAUcugGUGCGCaAGACG-GCCUGCg -3'
miRNA:   3'- -UC-CACUUG---CACGCG-UUUGCgCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 144744 1.09 0.006619
Target:  5'- gAGGUGAACGUGCGCAAACGCGCCUACc -3'
miRNA:   3'- -UCCACUUGCACGCGUUUGCGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 142204 0.69 0.921887
Target:  5'- --cUGAGCGUGCGCGAGgagaucccCGCGUCcgACg -3'
miRNA:   3'- uccACUUGCACGCGUUU--------GCGCGGa-UG- -5'
1616 5' -53.8 NC_001347.2 + 139475 0.7 0.897961
Target:  5'- cGGUGcGCGUGcCGUuguACcCGCCUACg -3'
miRNA:   3'- uCCACuUGCAC-GCGuu-UGcGCGGAUG- -5'
1616 5' -53.8 NC_001347.2 + 134993 0.69 0.910391
Target:  5'- cGG-GGACGUGCGUu--CGUGCCg-- -3'
miRNA:   3'- uCCaCUUGCACGCGuuuGCGCGGaug -5'
1616 5' -53.8 NC_001347.2 + 126557 0.67 0.967559
Target:  5'- cAGGUGGacacgcagaucaacGCGUucCGCGAacguGCGCGUCUGCc -3'
miRNA:   3'- -UCCACU--------------UGCAc-GCGUU----UGCGCGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.