miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16160 3' -63 NC_004065.1 + 210983 0.66 0.773476
Target:  5'- -aGAuGUGggCCacCGCCGCCGUCGUCc -3'
miRNA:   3'- ggCUcCGCgaGGa-GCGGCGGCAGCGG- -5'
16160 3' -63 NC_004065.1 + 4708 0.66 0.773476
Target:  5'- uCCGGgauGGCGCuuccagcaauUCCUCaacaGCuauCGCCaGUCGCCa -3'
miRNA:   3'- -GGCU---CCGCG----------AGGAG----CG---GCGG-CAGCGG- -5'
16160 3' -63 NC_004065.1 + 96118 0.66 0.773476
Target:  5'- uUCGAGGCggucGCUCCgCGaggguggcCCGUCGUucCGCCc -3'
miRNA:   3'- -GGCUCCG----CGAGGaGC--------GGCGGCA--GCGG- -5'
16160 3' -63 NC_004065.1 + 121098 0.66 0.773476
Target:  5'- gCCGcAGGCGCagCgCGCUuUCGUCGCg -3'
miRNA:   3'- -GGC-UCCGCGagGaGCGGcGGCAGCGg -5'
16160 3' -63 NC_004065.1 + 99954 0.66 0.773476
Target:  5'- gCGGcGGCuGCUgCUgCGaaaCGCCGUcCGCCa -3'
miRNA:   3'- gGCU-CCG-CGAgGA-GCg--GCGGCA-GCGG- -5'
16160 3' -63 NC_004065.1 + 97669 0.66 0.773475
Target:  5'- gCGAucuGGCGCaggaugugauacUCgCggUCGCUGCCGcCGCCg -3'
miRNA:   3'- gGCU---CCGCG------------AG-G--AGCGGCGGCaGCGG- -5'
16160 3' -63 NC_004065.1 + 85794 0.66 0.773475
Target:  5'- aCCGAGGCGCgagaa-CCGgCGUCGgCg -3'
miRNA:   3'- -GGCUCCGCGaggagcGGCgGCAGCgG- -5'
16160 3' -63 NC_004065.1 + 168649 0.66 0.773475
Target:  5'- gCCGGcgcGGCGaCgucgUCUCGuuGCCGUucuUGCCc -3'
miRNA:   3'- -GGCU---CCGC-Ga---GGAGCggCGGCA---GCGG- -5'
16160 3' -63 NC_004065.1 + 145751 0.66 0.773475
Target:  5'- aUGAGuGCGCcgaucgCgUCGCgCGCCgGUCGCg -3'
miRNA:   3'- gGCUC-CGCGa-----GgAGCG-GCGG-CAGCGg -5'
16160 3' -63 NC_004065.1 + 26384 0.66 0.773475
Target:  5'- aCGGGGCGUUCCccaUGCCcCCGccuccaacucCGCCa -3'
miRNA:   3'- gGCUCCGCGAGGa--GCGGcGGCa---------GCGG- -5'
16160 3' -63 NC_004065.1 + 33399 0.66 0.773475
Target:  5'- cUCGAGGCGC---UCGCC-CCGgCGCa -3'
miRNA:   3'- -GGCUCCGCGaggAGCGGcGGCaGCGg -5'
16160 3' -63 NC_004065.1 + 60073 0.66 0.773475
Target:  5'- gCGAcGCGggCCgCGCuCGUCGUCGUCg -3'
miRNA:   3'- gGCUcCGCgaGGaGCG-GCGGCAGCGG- -5'
16160 3' -63 NC_004065.1 + 99865 0.66 0.771764
Target:  5'- gCCGGGGuCGCggauagcgacggCCUCGUccuuccucuCGCCGUugaugcUGCCg -3'
miRNA:   3'- -GGCUCC-GCGa-----------GGAGCG---------GCGGCA------GCGG- -5'
16160 3' -63 NC_004065.1 + 148485 0.66 0.764876
Target:  5'- aCGuGGCGCgugaUCCUCGgguCCGUC-UCGUCg -3'
miRNA:   3'- gGCuCCGCG----AGGAGC---GGCGGcAGCGG- -5'
16160 3' -63 NC_004065.1 + 148306 0.66 0.764876
Target:  5'- ---cGGUGUUcagcaCCUCgGCCGCCagGUCGCCc -3'
miRNA:   3'- ggcuCCGCGA-----GGAG-CGGCGG--CAGCGG- -5'
16160 3' -63 NC_004065.1 + 149705 0.66 0.764876
Target:  5'- gCCGGGGgGC----CGCgGCCG-CGCCg -3'
miRNA:   3'- -GGCUCCgCGaggaGCGgCGGCaGCGG- -5'
16160 3' -63 NC_004065.1 + 68588 0.66 0.764876
Target:  5'- gCGGcGGCGaUCCagagCGCCGacaCGUCGCa -3'
miRNA:   3'- gGCU-CCGCgAGGa---GCGGCg--GCAGCGg -5'
16160 3' -63 NC_004065.1 + 46048 0.66 0.764876
Target:  5'- -aGAGGCcCUCCUgGCgGuCCG-CGUCa -3'
miRNA:   3'- ggCUCCGcGAGGAgCGgC-GGCaGCGG- -5'
16160 3' -63 NC_004065.1 + 176063 0.66 0.764876
Target:  5'- cUCGGGG-GCUCUaCGCCGUCGUUa-- -3'
miRNA:   3'- -GGCUCCgCGAGGaGCGGCGGCAGcgg -5'
16160 3' -63 NC_004065.1 + 111586 0.66 0.764876
Target:  5'- gCCGAGGaaga-CgaggaCGCCGCCGuguUCGCCg -3'
miRNA:   3'- -GGCUCCgcgagGa----GCGGCGGC---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.