miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16160 5' -52.7 NC_004065.1 + 120419 0.66 0.996512
Target:  5'- cACcGCGGCC-CGGGGGucgagcgcggccUGAUacgccGCCAGGa -3'
miRNA:   3'- -UGcUGCUGGuGCCUCU------------ACUA-----UGGUCC- -5'
16160 5' -52.7 NC_004065.1 + 211417 0.66 0.996512
Target:  5'- aACGugGGCCugGGcGGUGAcgacaacACCAa- -3'
miRNA:   3'- -UGCugCUGGugCCuCUACUa------UGGUcc -5'
16160 5' -52.7 NC_004065.1 + 138544 0.66 0.996512
Target:  5'- cACGGCGACguCGugcaccucuGuGAcGAUGCCAGGc -3'
miRNA:   3'- -UGCUGCUGguGC---------CuCUaCUAUGGUCC- -5'
16160 5' -52.7 NC_004065.1 + 170594 0.66 0.996512
Target:  5'- cACGACGACUuugucguCGGAGAcauugGCCGGc -3'
miRNA:   3'- -UGCUGCUGGu------GCCUCUacua-UGGUCc -5'
16160 5' -52.7 NC_004065.1 + 32965 0.66 0.996176
Target:  5'- uCGACGucGCgGCGGAGcAUGAcggaggccucgcggACCAGGc -3'
miRNA:   3'- uGCUGC--UGgUGCCUC-UACUa-------------UGGUCC- -5'
16160 5' -52.7 NC_004065.1 + 207058 0.66 0.995938
Target:  5'- -gGGCGAUCuCGGGGGUuuccgccucGAUGCCGGc -3'
miRNA:   3'- ugCUGCUGGuGCCUCUA---------CUAUGGUCc -5'
16160 5' -52.7 NC_004065.1 + 70588 0.66 0.995938
Target:  5'- aACGACGACgucgauCGGAGGUGugACCGacGGu -3'
miRNA:   3'- -UGCUGCUGgu----GCCUCUACuaUGGU--CC- -5'
16160 5' -52.7 NC_004065.1 + 834 0.66 0.995938
Target:  5'- aACGuCGuuCACGGAGGUGuUACgCGGa -3'
miRNA:   3'- -UGCuGCugGUGCCUCUACuAUG-GUCc -5'
16160 5' -52.7 NC_004065.1 + 17 0.66 0.995938
Target:  5'- -aGACGGCCGgGGGGGauaaaaagUGGUacugaGCUAGGu -3'
miRNA:   3'- ugCUGCUGGUgCCUCU--------ACUA-----UGGUCC- -5'
16160 5' -52.7 NC_004065.1 + 163660 0.66 0.995938
Target:  5'- uCGACGAUCAgCGGccGGUGuUGCuCAGGa -3'
miRNA:   3'- uGCUGCUGGU-GCCu-CUACuAUG-GUCC- -5'
16160 5' -52.7 NC_004065.1 + 62402 0.66 0.995938
Target:  5'- gUGGCGGCCGCGGAuccagcACCAGa -3'
miRNA:   3'- uGCUGCUGGUGCCUcuacuaUGGUCc -5'
16160 5' -52.7 NC_004065.1 + 56158 0.66 0.995876
Target:  5'- aGCGAgucgcauCGAUCACGGuGAaGAcccaGCCGGGg -3'
miRNA:   3'- -UGCU-------GCUGGUGCCuCUaCUa---UGGUCC- -5'
16160 5' -52.7 NC_004065.1 + 168568 0.66 0.995288
Target:  5'- gGCGcaGCGcAUCACGGAGcgGGUcggGCCGGc -3'
miRNA:   3'- -UGC--UGC-UGGUGCCUCuaCUA---UGGUCc -5'
16160 5' -52.7 NC_004065.1 + 35504 0.66 0.995288
Target:  5'- cACGACcggcgucuuggaGGCgACGGAGGUGGggaCGGGc -3'
miRNA:   3'- -UGCUG------------CUGgUGCCUCUACUaugGUCC- -5'
16160 5' -52.7 NC_004065.1 + 114544 0.66 0.995288
Target:  5'- -gGACG-CCuauCGGGGggGAUACCAu- -3'
miRNA:   3'- ugCUGCuGGu--GCCUCuaCUAUGGUcc -5'
16160 5' -52.7 NC_004065.1 + 72311 0.66 0.995288
Target:  5'- cGCcGCGACCGCGGucccgacGGUGAUcACCugcGGa -3'
miRNA:   3'- -UGcUGCUGGUGCCu------CUACUA-UGGu--CC- -5'
16160 5' -52.7 NC_004065.1 + 114878 0.66 0.995288
Target:  5'- cCGACGACgAUGGcGGUGAccucucccUACCcGGa -3'
miRNA:   3'- uGCUGCUGgUGCCuCUACU--------AUGGuCC- -5'
16160 5' -52.7 NC_004065.1 + 91180 0.66 0.995288
Target:  5'- gGCGACGGCCGCGGAagc---GCCGucGGc -3'
miRNA:   3'- -UGCUGCUGGUGCCUcuacuaUGGU--CC- -5'
16160 5' -52.7 NC_004065.1 + 173041 0.66 0.995288
Target:  5'- cAUGGCGGCCACGGccaucagGAUcCCGGa -3'
miRNA:   3'- -UGCUGCUGGUGCCucua---CUAuGGUCc -5'
16160 5' -52.7 NC_004065.1 + 95918 0.66 0.995288
Target:  5'- uUGACGGgCGCGGAcgcGAucUGAgGCUAGGa -3'
miRNA:   3'- uGCUGCUgGUGCCU---CU--ACUaUGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.