miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16161 5' -58.3 NC_004065.1 + 137881 0.66 0.918022
Target:  5'- uUCGGUGUUUG-GUCGcGUgcGACCGUa -3'
miRNA:   3'- gAGCCACGAGCgCAGCuCA--CUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 28865 0.66 0.906722
Target:  5'- gUCGGcGCUgcUGCGUgaCGAG-GACUGCUg -3'
miRNA:   3'- gAGCCaCGA--GCGCA--GCUCaCUGGCGA- -5'
16161 5' -58.3 NC_004065.1 + 680 0.66 0.906722
Target:  5'- -----cGCUCGCugGUCGAGcGACCGCc -3'
miRNA:   3'- gagccaCGAGCG--CAGCUCaCUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 82341 0.66 0.900751
Target:  5'- -gUGGUGUcgcugacgaUCGCGUCGucAGUGACCuccuGCUu -3'
miRNA:   3'- gaGCCACG---------AGCGCAGC--UCACUGG----CGA- -5'
16161 5' -58.3 NC_004065.1 + 138318 0.66 0.900751
Target:  5'- -gCGGgaGCUCGCGgacaucGUGGCCGCg -3'
miRNA:   3'- gaGCCa-CGAGCGCagcu--CACUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 67718 0.67 0.867794
Target:  5'- gUCGGUaucGC-CGUGaCGAGcGACCGCUc -3'
miRNA:   3'- gAGCCA---CGaGCGCaGCUCaCUGGCGA- -5'
16161 5' -58.3 NC_004065.1 + 187405 0.67 0.860608
Target:  5'- -gCGGUGUg-GCGUCGAGggcGAgCGCa -3'
miRNA:   3'- gaGCCACGagCGCAGCUCa--CUgGCGa -5'
16161 5' -58.3 NC_004065.1 + 67833 0.68 0.805396
Target:  5'- -aCGGUaGCUCGUGUCGAGcGGUCGUc -3'
miRNA:   3'- gaGCCA-CGAGCGCAGCUCaCUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 101935 0.68 0.796884
Target:  5'- -aCGGU-CUCGaagaaGUCGcgGGUGACCGCa -3'
miRNA:   3'- gaGCCAcGAGCg----CAGC--UCACUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 68113 0.69 0.788236
Target:  5'- -aCGGUGaCUCGaGaCGAGUGACCGg- -3'
miRNA:   3'- gaGCCAC-GAGCgCaGCUCACUGGCga -5'
16161 5' -58.3 NC_004065.1 + 35933 0.69 0.752449
Target:  5'- uUCGGUGCUC-UGUCGc--GGCCGCa -3'
miRNA:   3'- gAGCCACGAGcGCAGCucaCUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 56564 0.8 0.242083
Target:  5'- uUCGGUGCUgGCGUCGAGc-GCCGCc -3'
miRNA:   3'- gAGCCACGAgCGCAGCUCacUGGCGa -5'
16161 5' -58.3 NC_004065.1 + 161945 1.07 0.003983
Target:  5'- aCUCGGUGCUCGCGUCGAGUGACCGCUc -3'
miRNA:   3'- -GAGCCACGAGCGCAGCUCACUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.