miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16162 5' -56.8 NC_004065.1 + 189035 0.66 0.956545
Target:  5'- gUGCagucgUCGUucaACCACGccgucucgaucuUCUGgGUGUCCGGa -3'
miRNA:   3'- -ACG-----AGCA---UGGUGC------------AGGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 63581 0.66 0.955445
Target:  5'- gUGCUCGUgcugcuacguaacaACCACaccaaggcggaGUCgGUG-GUCCGAg -3'
miRNA:   3'- -ACGAGCA--------------UGGUG-----------CAGgCGCaCAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 96071 0.66 0.952806
Target:  5'- gGCUU--GCC-CGUCCGCGgGUCuCGGc -3'
miRNA:   3'- aCGAGcaUGGuGCAGGCGCaCAG-GCU- -5'
16162 5' -56.8 NC_004065.1 + 42364 0.66 0.952421
Target:  5'- gGCUCGUGCC-CGUggaccCCGCcgacaugauguacGUGgCCGAu -3'
miRNA:   3'- aCGAGCAUGGuGCA-----GGCG-------------CACaGGCU- -5'
16162 5' -56.8 NC_004065.1 + 40825 0.66 0.948857
Target:  5'- cGUUCG-GCCGCGUCCcugaCGuUGUCCa- -3'
miRNA:   3'- aCGAGCaUGGUGCAGGc---GC-ACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 76299 0.66 0.94845
Target:  5'- aGCUCGUucucgucgaGCCGgaggaucCG-CCGCGUGUUgGAa -3'
miRNA:   3'- aCGAGCA---------UGGU-------GCaGGCGCACAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 90299 0.66 0.944694
Target:  5'- cUGCUUGgggaUGCC-CGgcagCCGCGUGUUCa- -3'
miRNA:   3'- -ACGAGC----AUGGuGCa---GGCGCACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 80458 0.66 0.940316
Target:  5'- aGUUCGUACCcgACGagCGCGaGUCgGAc -3'
miRNA:   3'- aCGAGCAUGG--UGCagGCGCaCAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 152667 0.66 0.940316
Target:  5'- gUGCUCGU--CGCG-CUGCGUGUagcaCCGGu -3'
miRNA:   3'- -ACGAGCAugGUGCaGGCGCACA----GGCU- -5'
16162 5' -56.8 NC_004065.1 + 163712 0.66 0.940316
Target:  5'- cGCgUUGUccGCCGCGaucuUCCGCagcGUGUCCGu -3'
miRNA:   3'- aCG-AGCA--UGGUGC----AGGCG---CACAGGCu -5'
16162 5' -56.8 NC_004065.1 + 88740 0.66 0.935719
Target:  5'- cUGCUgGaagACCACGa-CGCaGUGUCCGGu -3'
miRNA:   3'- -ACGAgCa--UGGUGCagGCG-CACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 235 0.66 0.934774
Target:  5'- gUGCUCGguuaacgaguugGCCuuCGUCCGgcUGUCCGGc -3'
miRNA:   3'- -ACGAGCa-----------UGGu-GCAGGCgcACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 746 0.67 0.930905
Target:  5'- cGCgaccagCGUGCCGCGUC-GCGgGUUCGc -3'
miRNA:   3'- aCGa-----GCAUGGUGCAGgCGCaCAGGCu -5'
16162 5' -56.8 NC_004065.1 + 120624 0.67 0.92587
Target:  5'- aGCUCGUG--GCGUCCGCcgcggCCGAc -3'
miRNA:   3'- aCGAGCAUggUGCAGGCGcaca-GGCU- -5'
16162 5' -56.8 NC_004065.1 + 138244 0.67 0.92587
Target:  5'- cGCUCGccGCCGuCGaggagggUCGgGUGUCCGAg -3'
miRNA:   3'- aCGAGCa-UGGU-GCa------GGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 183841 0.67 0.92587
Target:  5'- cGUUCGgcccCCACGccgUCGCGUGUuuGGc -3'
miRNA:   3'- aCGAGCau--GGUGCa--GGCGCACAggCU- -5'
16162 5' -56.8 NC_004065.1 + 214802 0.67 0.920616
Target:  5'- cGCUCuc-UCACaucaUCCGCGUGUUCGAg -3'
miRNA:   3'- aCGAGcauGGUGc---AGGCGCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 33247 0.67 0.920616
Target:  5'- gGCUgaucaUGUGCCAggacgaucuCGaCCGgGUGUCCGAu -3'
miRNA:   3'- aCGA-----GCAUGGU---------GCaGGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 137789 0.67 0.920616
Target:  5'- aUGCUCGU-CUGCGUagUGUGUGUCgGGg -3'
miRNA:   3'- -ACGAGCAuGGUGCAg-GCGCACAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 199247 0.67 0.915142
Target:  5'- cGUcaUCGU-CgGCGUCCGCGUccgCCGAc -3'
miRNA:   3'- aCG--AGCAuGgUGCAGGCGCAca-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.