Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 199247 | 0.67 | 0.915142 |
Target: 5'- cGUcaUCGU-CgGCGUCCGCGUccgCCGAc -3' miRNA: 3'- aCG--AGCAuGgUGCAGGCGCAca-GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 123500 | 0.67 | 0.915142 |
Target: 5'- uUGgUCG-ACacgaACGUCUGCGgGUCCGGg -3' miRNA: 3'- -ACgAGCaUGg---UGCAGGCGCaCAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 208155 | 0.67 | 0.913458 |
Target: 5'- cGUUCGUACC--GUCCGCgGUGuguacaacgaggcaUCCGAc -3' miRNA: 3'- aCGAGCAUGGugCAGGCG-CAC--------------AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 67635 | 0.67 | 0.90945 |
Target: 5'- cGUUCGagaUGCCggugGCGUCgagCGgGUGUCCGAa -3' miRNA: 3'- aCGAGC---AUGG----UGCAG---GCgCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 98029 | 0.67 | 0.90945 |
Target: 5'- aGCUCGgagacgucgAUCGCGgaCUGCGUGUCCc- -3' miRNA: 3'- aCGAGCa--------UGGUGCa-GGCGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 206797 | 0.67 | 0.90945 |
Target: 5'- cGCUCGUGUCGCGUCCa-GaGUCCGu -3' miRNA: 3'- aCGAGCAUGGUGCAGGcgCaCAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 146031 | 0.67 | 0.903542 |
Target: 5'- aGCUgGcggGCgACGUCauCGCGaUGUCCGAg -3' miRNA: 3'- aCGAgCa--UGgUGCAG--GCGC-ACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 195426 | 0.67 | 0.902939 |
Target: 5'- cGCUCccGCCGCGUcgCCGuCGUcggacagGUCCGAg -3' miRNA: 3'- aCGAGcaUGGUGCA--GGC-GCA-------CAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 105712 | 0.68 | 0.897418 |
Target: 5'- gGCgacggCGaACCACGacaUCCGCGUGUUCc- -3' miRNA: 3'- aCGa----GCaUGGUGC---AGGCGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 121036 | 0.68 | 0.891082 |
Target: 5'- uUGCUCGggGCCGCGaucgUCGCGUacuugGUCgCGAa -3' miRNA: 3'- -ACGAGCa-UGGUGCa---GGCGCA-----CAG-GCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 176970 | 0.68 | 0.891082 |
Target: 5'- cGUUCGUAUCuuCGUCCGCGg--CCa- -3' miRNA: 3'- aCGAGCAUGGu-GCAGGCGCacaGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 105087 | 0.68 | 0.884537 |
Target: 5'- cGCgcaacgCGaACCugGUgCGCGUGguggCCGAc -3' miRNA: 3'- aCGa-----GCaUGGugCAgGCGCACa---GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 195839 | 0.68 | 0.884537 |
Target: 5'- cGCUCGaGCC-CGUCCGaGUcuUCCGAg -3' miRNA: 3'- aCGAGCaUGGuGCAGGCgCAc-AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 148971 | 0.68 | 0.870835 |
Target: 5'- gUGCggGUuccACCACGuucccgUCUGCGUGUUCGAu -3' miRNA: 3'- -ACGagCA---UGGUGC------AGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 174383 | 0.69 | 0.86657 |
Target: 5'- cGaCUCGaGCC-CGUCUucauggucaaggcguGCGUGUCCGGg -3' miRNA: 3'- aC-GAGCaUGGuGCAGG---------------CGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 133490 | 0.69 | 0.863687 |
Target: 5'- gUGCUggCGUugaUACGUCCGCuacgGUCCGAg -3' miRNA: 3'- -ACGA--GCAug-GUGCAGGCGca--CAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 800 | 0.69 | 0.856347 |
Target: 5'- cUGUUCGaguguUGCCACGUaCCGCGc-UCCGGa -3' miRNA: 3'- -ACGAGC-----AUGGUGCA-GGCGCacAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 109913 | 0.69 | 0.856347 |
Target: 5'- gGCUCGUccGCCGCGgccgCCGuCGcGUCCc- -3' miRNA: 3'- aCGAGCA--UGGUGCa---GGC-GCaCAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 199626 | 0.69 | 0.856347 |
Target: 5'- aGCUCGU-CCACGuugUCCGCGa-UCCGc -3' miRNA: 3'- aCGAGCAuGGUGC---AGGCGCacAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 168977 | 0.69 | 0.841113 |
Target: 5'- --gUCGUGCCcucACGgcgaGCGUGUCCGAg -3' miRNA: 3'- acgAGCAUGG---UGCagg-CGCACAGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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