miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16162 5' -56.8 NC_004065.1 + 105087 0.68 0.884537
Target:  5'- cGCgcaacgCGaACCugGUgCGCGUGguggCCGAc -3'
miRNA:   3'- aCGa-----GCaUGGugCAgGCGCACa---GGCU- -5'
16162 5' -56.8 NC_004065.1 + 105712 0.68 0.897418
Target:  5'- gGCgacggCGaACCACGacaUCCGCGUGUUCc- -3'
miRNA:   3'- aCGa----GCaUGGUGC---AGGCGCACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 109913 0.69 0.856347
Target:  5'- gGCUCGUccGCCGCGgccgCCGuCGcGUCCc- -3'
miRNA:   3'- aCGAGCA--UGGUGCa---GGC-GCaCAGGcu -5'
16162 5' -56.8 NC_004065.1 + 120624 0.67 0.92587
Target:  5'- aGCUCGUG--GCGUCCGCcgcggCCGAc -3'
miRNA:   3'- aCGAGCAUggUGCAGGCGcaca-GGCU- -5'
16162 5' -56.8 NC_004065.1 + 121036 0.68 0.891082
Target:  5'- uUGCUCGggGCCGCGaucgUCGCGUacuugGUCgCGAa -3'
miRNA:   3'- -ACGAGCa-UGGUGCa---GGCGCA-----CAG-GCU- -5'
16162 5' -56.8 NC_004065.1 + 122133 0.73 0.611068
Target:  5'- cUGCUCGgagAUCACGUCCGUGaucUG-CCGGa -3'
miRNA:   3'- -ACGAGCa--UGGUGCAGGCGC---ACaGGCU- -5'
16162 5' -56.8 NC_004065.1 + 123500 0.67 0.915142
Target:  5'- uUGgUCG-ACacgaACGUCUGCGgGUCCGGg -3'
miRNA:   3'- -ACgAGCaUGg---UGCAGGCGCaCAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 124856 0.67 0.915142
Target:  5'- cGCgaucaucCGcGCCACGUCCGagGUGcCCGGg -3'
miRNA:   3'- aCGa------GCaUGGUGCAGGCg-CACaGGCU- -5'
16162 5' -56.8 NC_004065.1 + 133490 0.69 0.863687
Target:  5'- gUGCUggCGUugaUACGUCCGCuacgGUCCGAg -3'
miRNA:   3'- -ACGA--GCAug-GUGCAGGCGca--CAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 137789 0.67 0.920616
Target:  5'- aUGCUCGU-CUGCGUagUGUGUGUCgGGg -3'
miRNA:   3'- -ACGAGCAuGGUGCAg-GCGCACAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 138244 0.67 0.92587
Target:  5'- cGCUCGccGCCGuCGaggagggUCGgGUGUCCGAg -3'
miRNA:   3'- aCGAGCa-UGGU-GCa------GGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 146031 0.67 0.903542
Target:  5'- aGCUgGcggGCgACGUCauCGCGaUGUCCGAg -3'
miRNA:   3'- aCGAgCa--UGgUGCAG--GCGC-ACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 147869 0.7 0.803514
Target:  5'- gGCUgGUGCCucgccaggagguacaGCGUCCGCGccgCCGGa -3'
miRNA:   3'- aCGAgCAUGG---------------UGCAGGCGCacaGGCU- -5'
16162 5' -56.8 NC_004065.1 + 148971 0.68 0.870835
Target:  5'- gUGCggGUuccACCACGuucccgUCUGCGUGUUCGAu -3'
miRNA:   3'- -ACGagCA---UGGUGC------AGGCGCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 152667 0.66 0.940316
Target:  5'- gUGCUCGU--CGCG-CUGCGUGUagcaCCGGu -3'
miRNA:   3'- -ACGAGCAugGUGCaGGCGCACA----GGCU- -5'
16162 5' -56.8 NC_004065.1 + 162095 1.09 0.004545
Target:  5'- gUGCUCGUACCACGUCCGCGUGUCCGAu -3'
miRNA:   3'- -ACGAGCAUGGUGCAGGCGCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 163712 0.66 0.940316
Target:  5'- cGCgUUGUccGCCGCGaucuUCCGCagcGUGUCCGu -3'
miRNA:   3'- aCG-AGCA--UGGUGC----AGGCG---CACAGGCu -5'
16162 5' -56.8 NC_004065.1 + 168977 0.69 0.841113
Target:  5'- --gUCGUGCCcucACGgcgaGCGUGUCCGAg -3'
miRNA:   3'- acgAGCAUGG---UGCagg-CGCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 174383 0.69 0.86657
Target:  5'- cGaCUCGaGCC-CGUCUucauggucaaggcguGCGUGUCCGGg -3'
miRNA:   3'- aC-GAGCaUGGuGCAGG---------------CGCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 176970 0.68 0.891082
Target:  5'- cGUUCGUAUCuuCGUCCGCGg--CCa- -3'
miRNA:   3'- aCGAGCAUGGu-GCAGGCGCacaGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.