Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 214802 | 0.67 | 0.920616 |
Target: 5'- cGCUCuc-UCACaucaUCCGCGUGUUCGAg -3' miRNA: 3'- aCGAGcauGGUGc---AGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 208155 | 0.67 | 0.913458 |
Target: 5'- cGUUCGUACC--GUCCGCgGUGuguacaacgaggcaUCCGAc -3' miRNA: 3'- aCGAGCAUGGugCAGGCG-CAC--------------AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 206797 | 0.67 | 0.90945 |
Target: 5'- cGCUCGUGUCGCGUCCa-GaGUCCGu -3' miRNA: 3'- aCGAGCAUGGUGCAGGcgCaCAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 199626 | 0.69 | 0.856347 |
Target: 5'- aGCUCGU-CCACGuugUCCGCGa-UCCGc -3' miRNA: 3'- aCGAGCAuGGUGC---AGGCGCacAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 199247 | 0.67 | 0.915142 |
Target: 5'- cGUcaUCGU-CgGCGUCCGCGUccgCCGAc -3' miRNA: 3'- aCG--AGCAuGgUGCAGGCGCAca-GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 198454 | 0.69 | 0.825181 |
Target: 5'- ---aCGUcGCCGCGUCCGCGUucggGUCgGAg -3' miRNA: 3'- acgaGCA-UGGUGCAGGCGCA----CAGgCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 196226 | 0.75 | 0.552778 |
Target: 5'- cGCgUCGUcCCACGUCCGCaUGUCgGGc -3' miRNA: 3'- aCG-AGCAuGGUGCAGGCGcACAGgCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 195839 | 0.68 | 0.884537 |
Target: 5'- cGCUCGaGCC-CGUCCGaGUcuUCCGAg -3' miRNA: 3'- aCGAGCaUGGuGCAGGCgCAc-AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 195426 | 0.67 | 0.902939 |
Target: 5'- cGCUCccGCCGCGUcgCCGuCGUcggacagGUCCGAg -3' miRNA: 3'- aCGAGcaUGGUGCA--GGC-GCA-------CAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 189035 | 0.66 | 0.956545 |
Target: 5'- gUGCagucgUCGUucaACCACGccgucucgaucuUCUGgGUGUCCGGa -3' miRNA: 3'- -ACG-----AGCA---UGGUGC------------AGGCgCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 187881 | 0.73 | 0.660089 |
Target: 5'- gGuCUCGUGCaCGCuGUCCgGCGUGUCCc- -3' miRNA: 3'- aC-GAGCAUG-GUG-CAGG-CGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 183841 | 0.67 | 0.92587 |
Target: 5'- cGUUCGgcccCCACGccgUCGCGUGUuuGGc -3' miRNA: 3'- aCGAGCau--GGUGCa--GGCGCACAggCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 176970 | 0.68 | 0.891082 |
Target: 5'- cGUUCGUAUCuuCGUCCGCGg--CCa- -3' miRNA: 3'- aCGAGCAUGGu-GCAGGCGCacaGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 174383 | 0.69 | 0.86657 |
Target: 5'- cGaCUCGaGCC-CGUCUucauggucaaggcguGCGUGUCCGGg -3' miRNA: 3'- aC-GAGCaUGGuGCAGG---------------CGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 168977 | 0.69 | 0.841113 |
Target: 5'- --gUCGUGCCcucACGgcgaGCGUGUCCGAg -3' miRNA: 3'- acgAGCAUGG---UGCagg-CGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 163712 | 0.66 | 0.940316 |
Target: 5'- cGCgUUGUccGCCGCGaucuUCCGCagcGUGUCCGu -3' miRNA: 3'- aCG-AGCA--UGGUGC----AGGCG---CACAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 162095 | 1.09 | 0.004545 |
Target: 5'- gUGCUCGUACCACGUCCGCGUGUCCGAu -3' miRNA: 3'- -ACGAGCAUGGUGCAGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 152667 | 0.66 | 0.940316 |
Target: 5'- gUGCUCGU--CGCG-CUGCGUGUagcaCCGGu -3' miRNA: 3'- -ACGAGCAugGUGCaGGCGCACA----GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 148971 | 0.68 | 0.870835 |
Target: 5'- gUGCggGUuccACCACGuucccgUCUGCGUGUUCGAu -3' miRNA: 3'- -ACGagCA---UGGUGC------AGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 147869 | 0.7 | 0.803514 |
Target: 5'- gGCUgGUGCCucgccaggagguacaGCGUCCGCGccgCCGGa -3' miRNA: 3'- aCGAgCAUGG---------------UGCAGGCGCacaGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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