Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 146031 | 0.67 | 0.903542 |
Target: 5'- aGCUgGcggGCgACGUCauCGCGaUGUCCGAg -3' miRNA: 3'- aCGAgCa--UGgUGCAG--GCGC-ACAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 138244 | 0.67 | 0.92587 |
Target: 5'- cGCUCGccGCCGuCGaggagggUCGgGUGUCCGAg -3' miRNA: 3'- aCGAGCa-UGGU-GCa------GGCgCACAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 137789 | 0.67 | 0.920616 |
Target: 5'- aUGCUCGU-CUGCGUagUGUGUGUCgGGg -3' miRNA: 3'- -ACGAGCAuGGUGCAg-GCGCACAGgCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 133490 | 0.69 | 0.863687 |
Target: 5'- gUGCUggCGUugaUACGUCCGCuacgGUCCGAg -3' miRNA: 3'- -ACGA--GCAug-GUGCAGGCGca--CAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 124856 | 0.67 | 0.915142 |
Target: 5'- cGCgaucaucCGcGCCACGUCCGagGUGcCCGGg -3' miRNA: 3'- aCGa------GCaUGGUGCAGGCg-CACaGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 123500 | 0.67 | 0.915142 |
Target: 5'- uUGgUCG-ACacgaACGUCUGCGgGUCCGGg -3' miRNA: 3'- -ACgAGCaUGg---UGCAGGCGCaCAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 122133 | 0.73 | 0.611068 |
Target: 5'- cUGCUCGgagAUCACGUCCGUGaucUG-CCGGa -3' miRNA: 3'- -ACGAGCa--UGGUGCAGGCGC---ACaGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 121036 | 0.68 | 0.891082 |
Target: 5'- uUGCUCGggGCCGCGaucgUCGCGUacuugGUCgCGAa -3' miRNA: 3'- -ACGAGCa-UGGUGCa---GGCGCA-----CAG-GCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 120624 | 0.67 | 0.92587 |
Target: 5'- aGCUCGUG--GCGUCCGCcgcggCCGAc -3' miRNA: 3'- aCGAGCAUggUGCAGGCGcaca-GGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 109913 | 0.69 | 0.856347 |
Target: 5'- gGCUCGUccGCCGCGgccgCCGuCGcGUCCc- -3' miRNA: 3'- aCGAGCA--UGGUGCa---GGC-GCaCAGGcu -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 105712 | 0.68 | 0.897418 |
Target: 5'- gGCgacggCGaACCACGacaUCCGCGUGUUCc- -3' miRNA: 3'- aCGa----GCaUGGUGC---AGGCGCACAGGcu -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 105087 | 0.68 | 0.884537 |
Target: 5'- cGCgcaacgCGaACCugGUgCGCGUGguggCCGAc -3' miRNA: 3'- aCGa-----GCaUGGugCAgGCGCACa---GGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 98029 | 0.67 | 0.90945 |
Target: 5'- aGCUCGgagacgucgAUCGCGgaCUGCGUGUCCc- -3' miRNA: 3'- aCGAGCa--------UGGUGCa-GGCGCACAGGcu -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 96071 | 0.66 | 0.952806 |
Target: 5'- gGCUU--GCC-CGUCCGCGgGUCuCGGc -3' miRNA: 3'- aCGAGcaUGGuGCAGGCGCaCAG-GCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 91492 | 0.7 | 0.81697 |
Target: 5'- cGCUCGUGCCGCGUUCGagcg-CCa- -3' miRNA: 3'- aCGAGCAUGGUGCAGGCgcacaGGcu -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 90299 | 0.66 | 0.944694 |
Target: 5'- cUGCUUGgggaUGCC-CGgcagCCGCGUGUUCa- -3' miRNA: 3'- -ACGAGC----AUGGuGCa---GGCGCACAGGcu -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 88740 | 0.66 | 0.935719 |
Target: 5'- cUGCUgGaagACCACGa-CGCaGUGUCCGGu -3' miRNA: 3'- -ACGAgCa--UGGUGCagGCG-CACAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 81096 | 0.71 | 0.75559 |
Target: 5'- aGCUCccugGUACCccacCGUCCGCGaguUGUUCGAg -3' miRNA: 3'- aCGAG----CAUGGu---GCAGGCGC---ACAGGCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 80458 | 0.66 | 0.940316 |
Target: 5'- aGUUCGUACCcgACGagCGCGaGUCgGAc -3' miRNA: 3'- aCGAGCAUGG--UGCagGCGCaCAGgCU- -5' |
|||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 77788 | 0.69 | 0.825181 |
Target: 5'- gUGCUCGUACCGCGaCaaCGUGUUCc- -3' miRNA: 3'- -ACGAGCAUGGUGCaGgcGCACAGGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home