Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 198454 | 0.69 | 0.825181 |
Target: 5'- ---aCGUcGCCGCGUCCGCGUucggGUCgGAg -3' miRNA: 3'- acgaGCA-UGGUGCAGGCGCA----CAGgCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 168977 | 0.69 | 0.841113 |
Target: 5'- --gUCGUGCCcucACGgcgaGCGUGUCCGAg -3' miRNA: 3'- acgAGCAUGG---UGCagg-CGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 109913 | 0.69 | 0.856347 |
Target: 5'- gGCUCGUccGCCGCGgccgCCGuCGcGUCCc- -3' miRNA: 3'- aCGAGCA--UGGUGCa---GGC-GCaCAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 199626 | 0.69 | 0.856347 |
Target: 5'- aGCUCGU-CCACGuugUCCGCGa-UCCGc -3' miRNA: 3'- aCGAGCAuGGUGC---AGGCGCacAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 133490 | 0.69 | 0.863687 |
Target: 5'- gUGCUggCGUugaUACGUCCGCuacgGUCCGAg -3' miRNA: 3'- -ACGA--GCAug-GUGCAGGCGca--CAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 195839 | 0.68 | 0.884537 |
Target: 5'- cGCUCGaGCC-CGUCCGaGUcuUCCGAg -3' miRNA: 3'- aCGAGCaUGGuGCAGGCgCAc-AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 176970 | 0.68 | 0.891082 |
Target: 5'- cGUUCGUAUCuuCGUCCGCGg--CCa- -3' miRNA: 3'- aCGAGCAUGGu-GCAGGCGCacaGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 105712 | 0.68 | 0.897418 |
Target: 5'- gGCgacggCGaACCACGacaUCCGCGUGUUCc- -3' miRNA: 3'- aCGa----GCaUGGUGC---AGGCGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 146031 | 0.67 | 0.903542 |
Target: 5'- aGCUgGcggGCgACGUCauCGCGaUGUCCGAg -3' miRNA: 3'- aCGAgCa--UGgUGCAG--GCGC-ACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 67635 | 0.67 | 0.90945 |
Target: 5'- cGUUCGagaUGCCggugGCGUCgagCGgGUGUCCGAa -3' miRNA: 3'- aCGAGC---AUGG----UGCAG---GCgCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 98029 | 0.67 | 0.90945 |
Target: 5'- aGCUCGgagacgucgAUCGCGgaCUGCGUGUCCc- -3' miRNA: 3'- aCGAGCa--------UGGUGCa-GGCGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 105087 | 0.68 | 0.884537 |
Target: 5'- cGCgcaacgCGaACCugGUgCGCGUGguggCCGAc -3' miRNA: 3'- aCGa-----GCaUGGugCAgGCGCACa---GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 148971 | 0.68 | 0.870835 |
Target: 5'- gUGCggGUuccACCACGuucccgUCUGCGUGUUCGAu -3' miRNA: 3'- -ACGagCA---UGGUGC------AGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 174383 | 0.69 | 0.86657 |
Target: 5'- cGaCUCGaGCC-CGUCUucauggucaaggcguGCGUGUCCGGg -3' miRNA: 3'- aC-GAGCaUGGuGCAGG---------------CGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 800 | 0.69 | 0.856347 |
Target: 5'- cUGUUCGaguguUGCCACGUaCCGCGc-UCCGGa -3' miRNA: 3'- -ACGAGC-----AUGGUGCA-GGCGCacAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 91492 | 0.7 | 0.81697 |
Target: 5'- cGCUCGUGCCGCGUUCGagcg-CCa- -3' miRNA: 3'- aCGAGCAUGGUGCAGGCgcacaGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 147869 | 0.7 | 0.803514 |
Target: 5'- gGCUgGUGCCucgccaggagguacaGCGUCCGCGccgCCGGa -3' miRNA: 3'- aCGAgCAUGG---------------UGCAGGCGCacaGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 4876 | 0.7 | 0.800092 |
Target: 5'- gGCUCGgucACCcaggaggaGCGUCCGCGUc-CCGAg -3' miRNA: 3'- aCGAGCa--UGG--------UGCAGGCGCAcaGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 187881 | 0.73 | 0.660089 |
Target: 5'- gGuCUCGUGCaCGCuGUCCgGCGUGUCCc- -3' miRNA: 3'- aC-GAGCAUG-GUG-CAGG-CGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 63581 | 0.66 | 0.955445 |
Target: 5'- gUGCUCGUgcugcuacguaacaACCACaccaaggcggaGUCgGUG-GUCCGAg -3' miRNA: 3'- -ACGAGCA--------------UGGUG-----------CAGgCGCaCAGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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