miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16162 5' -56.8 NC_004065.1 + 96071 0.66 0.952806
Target:  5'- gGCUU--GCC-CGUCCGCGgGUCuCGGc -3'
miRNA:   3'- aCGAGcaUGGuGCAGGCGCaCAG-GCU- -5'
16162 5' -56.8 NC_004065.1 + 176970 0.68 0.891082
Target:  5'- cGUUCGUAUCuuCGUCCGCGg--CCa- -3'
miRNA:   3'- aCGAGCAUGGu-GCAGGCGCacaGGcu -5'
16162 5' -56.8 NC_004065.1 + 235 0.66 0.934774
Target:  5'- gUGCUCGguuaacgaguugGCCuuCGUCCGgcUGUCCGGc -3'
miRNA:   3'- -ACGAGCa-----------UGGu-GCAGGCgcACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 152667 0.66 0.940316
Target:  5'- gUGCUCGU--CGCG-CUGCGUGUagcaCCGGu -3'
miRNA:   3'- -ACGAGCAugGUGCaGGCGCACA----GGCU- -5'
16162 5' -56.8 NC_004065.1 + 63581 0.66 0.955445
Target:  5'- gUGCUCGUgcugcuacguaacaACCACaccaaggcggaGUCgGUG-GUCCGAg -3'
miRNA:   3'- -ACGAGCA--------------UGGUG-----------CAGgCGCaCAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 137789 0.67 0.920616
Target:  5'- aUGCUCGU-CUGCGUagUGUGUGUCgGGg -3'
miRNA:   3'- -ACGAGCAuGGUGCAg-GCGCACAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 88740 0.66 0.935719
Target:  5'- cUGCUgGaagACCACGa-CGCaGUGUCCGGu -3'
miRNA:   3'- -ACGAgCa--UGGUGCagGCG-CACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 206797 0.67 0.90945
Target:  5'- cGCUCGUGUCGCGUCCa-GaGUCCGu -3'
miRNA:   3'- aCGAGCAUGGUGCAGGcgCaCAGGCu -5'
16162 5' -56.8 NC_004065.1 + 122133 0.73 0.611068
Target:  5'- cUGCUCGgagAUCACGUCCGUGaucUG-CCGGa -3'
miRNA:   3'- -ACGAGCa--UGGUGCAGGCGC---ACaGGCU- -5'
16162 5' -56.8 NC_004065.1 + 120624 0.67 0.92587
Target:  5'- aGCUCGUG--GCGUCCGCcgcggCCGAc -3'
miRNA:   3'- aCGAGCAUggUGCAGGCGcaca-GGCU- -5'
16162 5' -56.8 NC_004065.1 + 208155 0.67 0.913458
Target:  5'- cGUUCGUACC--GUCCGCgGUGuguacaacgaggcaUCCGAc -3'
miRNA:   3'- aCGAGCAUGGugCAGGCG-CAC--------------AGGCU- -5'
16162 5' -56.8 NC_004065.1 + 77788 0.69 0.825181
Target:  5'- gUGCUCGUACCGCGaCaaCGUGUUCc- -3'
miRNA:   3'- -ACGAGCAUGGUGCaGgcGCACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 90299 0.66 0.944694
Target:  5'- cUGCUUGgggaUGCC-CGgcagCCGCGUGUUCa- -3'
miRNA:   3'- -ACGAGC----AUGGuGCa---GGCGCACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 198454 0.69 0.825181
Target:  5'- ---aCGUcGCCGCGUCCGCGUucggGUCgGAg -3'
miRNA:   3'- acgaGCA-UGGUGCAGGCGCA----CAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 76299 0.66 0.94845
Target:  5'- aGCUCGUucucgucgaGCCGgaggaucCG-CCGCGUGUUgGAa -3'
miRNA:   3'- aCGAGCA---------UGGU-------GCaGGCGCACAGgCU- -5'
16162 5' -56.8 NC_004065.1 + 40825 0.66 0.948857
Target:  5'- cGUUCG-GCCGCGUCCcugaCGuUGUCCa- -3'
miRNA:   3'- aCGAGCaUGGUGCAGGc---GC-ACAGGcu -5'
16162 5' -56.8 NC_004065.1 + 189035 0.66 0.956545
Target:  5'- gUGCagucgUCGUucaACCACGccgucucgaucuUCUGgGUGUCCGGa -3'
miRNA:   3'- -ACG-----AGCA---UGGUGC------------AGGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 138244 0.67 0.92587
Target:  5'- cGCUCGccGCCGuCGaggagggUCGgGUGUCCGAg -3'
miRNA:   3'- aCGAGCa-UGGU-GCa------GGCgCACAGGCU- -5'
16162 5' -56.8 NC_004065.1 + 121036 0.68 0.891082
Target:  5'- uUGCUCGggGCCGCGaucgUCGCGUacuugGUCgCGAa -3'
miRNA:   3'- -ACGAGCa-UGGUGCa---GGCGCA-----CAG-GCU- -5'
16162 5' -56.8 NC_004065.1 + 195426 0.67 0.902939
Target:  5'- cGCUCccGCCGCGUcgCCGuCGUcggacagGUCCGAg -3'
miRNA:   3'- aCGAGcaUGGUGCA--GGC-GCA-------CAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.