Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16162 | 5' | -56.8 | NC_004065.1 | + | 40825 | 0.66 | 0.948857 |
Target: 5'- cGUUCG-GCCGCGUCCcugaCGuUGUCCa- -3' miRNA: 3'- aCGAGCaUGGUGCAGGc---GC-ACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 76299 | 0.66 | 0.94845 |
Target: 5'- aGCUCGUucucgucgaGCCGgaggaucCG-CCGCGUGUUgGAa -3' miRNA: 3'- aCGAGCA---------UGGU-------GCaGGCGCACAGgCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 90299 | 0.66 | 0.944694 |
Target: 5'- cUGCUUGgggaUGCC-CGgcagCCGCGUGUUCa- -3' miRNA: 3'- -ACGAGC----AUGGuGCa---GGCGCACAGGcu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 120624 | 0.67 | 0.92587 |
Target: 5'- aGCUCGUG--GCGUCCGCcgcggCCGAc -3' miRNA: 3'- aCGAGCAUggUGCAGGCGcaca-GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 214802 | 0.67 | 0.920616 |
Target: 5'- cGCUCuc-UCACaucaUCCGCGUGUUCGAg -3' miRNA: 3'- aCGAGcauGGUGc---AGGCGCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 138244 | 0.67 | 0.92587 |
Target: 5'- cGCUCGccGCCGuCGaggagggUCGgGUGUCCGAg -3' miRNA: 3'- aCGAGCa-UGGU-GCa------GGCgCACAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 124856 | 0.67 | 0.915142 |
Target: 5'- cGCgaucaucCGcGCCACGUCCGagGUGcCCGGg -3' miRNA: 3'- aCGa------GCaUGGUGCAGGCg-CACaGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 199247 | 0.67 | 0.915142 |
Target: 5'- cGUcaUCGU-CgGCGUCCGCGUccgCCGAc -3' miRNA: 3'- aCG--AGCAuGgUGCAGGCGCAca-GGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 123500 | 0.67 | 0.915142 |
Target: 5'- uUGgUCG-ACacgaACGUCUGCGgGUCCGGg -3' miRNA: 3'- -ACgAGCaUGg---UGCAGGCGCaCAGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 208155 | 0.67 | 0.913458 |
Target: 5'- cGUUCGUACC--GUCCGCgGUGuguacaacgaggcaUCCGAc -3' miRNA: 3'- aCGAGCAUGGugCAGGCG-CAC--------------AGGCU- -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 206797 | 0.67 | 0.90945 |
Target: 5'- cGCUCGUGUCGCGUCCa-GaGUCCGu -3' miRNA: 3'- aCGAGCAUGGUGCAGGcgCaCAGGCu -5' |
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16162 | 5' | -56.8 | NC_004065.1 | + | 162095 | 1.09 | 0.004545 |
Target: 5'- gUGCUCGUACCACGUCCGCGUGUCCGAu -3' miRNA: 3'- -ACGAGCAUGGUGCAGGCGCACAGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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