miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 3' -59.3 NC_004065.1 + 87091 0.66 0.842427
Target:  5'- --aGCUGGCCcUGGUGCCggaacucgaCGGCCg-- -3'
miRNA:   3'- uaaUGACCGGaGCCGCGG---------GUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 84028 0.66 0.834485
Target:  5'- -gUACUGGUCUcgaucgagaCGGCGUCC-GCCa-- -3'
miRNA:   3'- uaAUGACCGGA---------GCCGCGGGuCGGauc -5'
16164 3' -59.3 NC_004065.1 + 223852 0.66 0.834485
Target:  5'- --aACUcGuaCUCGGcCGCCCGGCCcGGc -3'
miRNA:   3'- uaaUGA-CcgGAGCC-GCGGGUCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 138578 0.66 0.826369
Target:  5'- --gGCgccGCUUCGGCGUCCAGgCCUu- -3'
miRNA:   3'- uaaUGac-CGGAGCCGCGGGUC-GGAuc -5'
16164 3' -59.3 NC_004065.1 + 159935 0.66 0.826369
Target:  5'- -gUGCUGcucgucGCCUCGGgGUCCGcGCCUu- -3'
miRNA:   3'- uaAUGAC------CGGAGCCgCGGGU-CGGAuc -5'
16164 3' -59.3 NC_004065.1 + 93475 0.66 0.818088
Target:  5'- -cUACcGGCCUCGGCucCCCGGaCCc-- -3'
miRNA:   3'- uaAUGaCCGGAGCCGc-GGGUC-GGauc -5'
16164 3' -59.3 NC_004065.1 + 34892 0.66 0.818088
Target:  5'- gGUUACUGGCCU-GGCggaaaguagacaGCCCGGUg--- -3'
miRNA:   3'- -UAAUGACCGGAgCCG------------CGGGUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 67125 0.66 0.809647
Target:  5'- -gUGCUGGacagCGGCGCgC-GCCUGGa -3'
miRNA:   3'- uaAUGACCgga-GCCGCGgGuCGGAUC- -5'
16164 3' -59.3 NC_004065.1 + 30495 0.66 0.801056
Target:  5'- --gGCUGGa---GGCGCCCGGCUg-- -3'
miRNA:   3'- uaaUGACCggagCCGCGGGUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 188982 0.66 0.801056
Target:  5'- --aGCUGGCCguuUUGGCGCa-GGCCUc- -3'
miRNA:   3'- uaaUGACCGG---AGCCGCGggUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 135625 0.67 0.79232
Target:  5'- --cGCgGGUCUaCGGCGCCacCAGCCg-- -3'
miRNA:   3'- uaaUGaCCGGA-GCCGCGG--GUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 26020 0.67 0.79232
Target:  5'- ----gUGGCCUCGGCGUcguccaCCAGCg--- -3'
miRNA:   3'- uaaugACCGGAGCCGCG------GGUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 136416 0.67 0.783449
Target:  5'- --aGCUGGuCCUgGGgGCCCggugAGCCgAGg -3'
miRNA:   3'- uaaUGACC-GGAgCCgCGGG----UCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 37786 0.67 0.765332
Target:  5'- --gACUGGCaCUCaGCGCC-AGCCa-- -3'
miRNA:   3'- uaaUGACCG-GAGcCGCGGgUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 97575 0.67 0.765332
Target:  5'- --aGCUGaCCUCGGCGCCCuucgacauGCUg-- -3'
miRNA:   3'- uaaUGACcGGAGCCGCGGGu-------CGGauc -5'
16164 3' -59.3 NC_004065.1 + 198992 0.68 0.737343
Target:  5'- ---cCUGGCgCUCGGCaggGCCgCGGCCgAGg -3'
miRNA:   3'- uaauGACCG-GAGCCG---CGG-GUCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 55776 0.68 0.737343
Target:  5'- --gGC-GGUCUCGGCGCCgAGCa--- -3'
miRNA:   3'- uaaUGaCCGGAGCCGCGGgUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 24117 0.68 0.72783
Target:  5'- --gACgucGGCCUCGGCGgCCCAuCCg-- -3'
miRNA:   3'- uaaUGa--CCGGAGCCGC-GGGUcGGauc -5'
16164 3' -59.3 NC_004065.1 + 146430 0.68 0.72783
Target:  5'- --aGCUGcgcGCCUCGaacGUGUUCAGCCUGGa -3'
miRNA:   3'- uaaUGAC---CGGAGC---CGCGGGUCGGAUC- -5'
16164 3' -59.3 NC_004065.1 + 221887 0.68 0.722085
Target:  5'- ----aUGGCCuUcugcgucgaccucgaCGGCGCCCGGCuCUGGg -3'
miRNA:   3'- uaaugACCGG-A---------------GCCGCGGGUCG-GAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.