Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16164 | 3' | -59.3 | NC_004065.1 | + | 221887 | 0.68 | 0.722085 |
Target: 5'- ----aUGGCCuUcugcgucgaccucgaCGGCGCCCGGCuCUGGg -3' miRNA: 3'- uaaugACCGG-A---------------GCCGCGGGUCG-GAUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 24117 | 0.68 | 0.72783 |
Target: 5'- --gACgucGGCCUCGGCGgCCCAuCCg-- -3' miRNA: 3'- uaaUGa--CCGGAGCCGC-GGGUcGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 81615 | 0.68 | 0.698858 |
Target: 5'- -aUGCUGGCCgagacguacuUCGGCGUCCAGg---- -3' miRNA: 3'- uaAUGACCGG----------AGCCGCGGGUCggauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 109195 | 0.69 | 0.65953 |
Target: 5'- -----aGGCCggcggCGGCGCCuCGGCCUc- -3' miRNA: 3'- uaaugaCCGGa----GCCGCGG-GUCGGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 129052 | 0.69 | 0.669413 |
Target: 5'- ---cCUGGCCUaccggaCGGCGCUguGCCgggAGa -3' miRNA: 3'- uaauGACCGGA------GCCGCGGguCGGa--UC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 122737 | 0.69 | 0.679267 |
Target: 5'- --cACUGGCCgugcgUCgGGCGCCCAGgaucaUCUGGu -3' miRNA: 3'- uaaUGACCGG-----AG-CCGCGGGUC-----GGAUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 85500 | 0.69 | 0.649626 |
Target: 5'- -gUGCUGGCCaugucgcUGGCGCUCGGCUUc- -3' miRNA: 3'- uaAUGACCGGa------GCCGCGGGUCGGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 162468 | 0.7 | 0.590185 |
Target: 5'- --gGCgaaGGCCUCGcGCGgCCGGCCaGGa -3' miRNA: 3'- uaaUGa--CCGGAGC-CGCgGGUCGGaUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 93548 | 0.7 | 0.58034 |
Target: 5'- -cUACcGGCCUCGGCucCCCGGCUUu- -3' miRNA: 3'- uaAUGaCCGGAGCCGc-GGGUCGGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 6934 | 0.71 | 0.531753 |
Target: 5'- -----cGGCCUCGGCGUCC-GCCg-- -3' miRNA: 3'- uaaugaCCGGAGCCGCGGGuCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 108103 | 0.71 | 0.551038 |
Target: 5'- --cGCgGuGCCUCGGC-CCCAGCCg-- -3' miRNA: 3'- uaaUGaC-CGGAGCCGcGGGUCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 101296 | 0.75 | 0.357512 |
Target: 5'- --gGCU-GCCUCGGCGgCCAGCCg-- -3' miRNA: 3'- uaaUGAcCGGAGCCGCgGGUCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 29689 | 0.81 | 0.136189 |
Target: 5'- gGUUGCUGaGCCUCGGCGCCCcgacGGgCUGGu -3' miRNA: 3'- -UAAUGAC-CGGAGCCGCGGG----UCgGAUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 162637 | 1.07 | 0.00249 |
Target: 5'- cAUUACUGGCCUCGGCGCCCAGCCUAGg -3' miRNA: 3'- -UAAUGACCGGAGCCGCGGGUCGGAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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