miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 3' -59.3 NC_004065.1 + 162637 1.07 0.00249
Target:  5'- cAUUACUGGCCUCGGCGCCCAGCCUAGg -3'
miRNA:   3'- -UAAUGACCGGAGCCGCGGGUCGGAUC- -5'
16164 3' -59.3 NC_004065.1 + 29689 0.81 0.136189
Target:  5'- gGUUGCUGaGCCUCGGCGCCCcgacGGgCUGGu -3'
miRNA:   3'- -UAAUGAC-CGGAGCCGCGGG----UCgGAUC- -5'
16164 3' -59.3 NC_004065.1 + 101296 0.75 0.357512
Target:  5'- --gGCU-GCCUCGGCGgCCAGCCg-- -3'
miRNA:   3'- uaaUGAcCGGAGCCGCgGGUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 6934 0.71 0.531753
Target:  5'- -----cGGCCUCGGCGUCC-GCCg-- -3'
miRNA:   3'- uaaugaCCGGAGCCGCGGGuCGGauc -5'
16164 3' -59.3 NC_004065.1 + 108103 0.71 0.551038
Target:  5'- --cGCgGuGCCUCGGC-CCCAGCCg-- -3'
miRNA:   3'- uaaUGaC-CGGAGCCGcGGGUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 93548 0.7 0.58034
Target:  5'- -cUACcGGCCUCGGCucCCCGGCUUu- -3'
miRNA:   3'- uaAUGaCCGGAGCCGc-GGGUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 162468 0.7 0.590185
Target:  5'- --gGCgaaGGCCUCGcGCGgCCGGCCaGGa -3'
miRNA:   3'- uaaUGa--CCGGAGC-CGCgGGUCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 122737 0.69 0.679267
Target:  5'- --cACUGGCCgugcgUCgGGCGCCCAGgaucaUCUGGu -3'
miRNA:   3'- uaaUGACCGG-----AG-CCGCGGGUC-----GGAUC- -5'
16164 3' -59.3 NC_004065.1 + 129052 0.69 0.669413
Target:  5'- ---cCUGGCCUaccggaCGGCGCUguGCCgggAGa -3'
miRNA:   3'- uaauGACCGGA------GCCGCGGguCGGa--UC- -5'
16164 3' -59.3 NC_004065.1 + 109195 0.69 0.65953
Target:  5'- -----aGGCCggcggCGGCGCCuCGGCCUc- -3'
miRNA:   3'- uaaugaCCGGa----GCCGCGG-GUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 85500 0.69 0.649626
Target:  5'- -gUGCUGGCCaugucgcUGGCGCUCGGCUUc- -3'
miRNA:   3'- uaAUGACCGGa------GCCGCGGGUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 146430 0.68 0.72783
Target:  5'- --aGCUGcgcGCCUCGaacGUGUUCAGCCUGGa -3'
miRNA:   3'- uaaUGAC---CGGAGC---CGCGGGUCGGAUC- -5'
16164 3' -59.3 NC_004065.1 + 81615 0.68 0.698858
Target:  5'- -aUGCUGGCCgagacguacuUCGGCGUCCAGg---- -3'
miRNA:   3'- uaAUGACCGG----------AGCCGCGGGUCggauc -5'
16164 3' -59.3 NC_004065.1 + 55776 0.68 0.737343
Target:  5'- --gGC-GGUCUCGGCGCCgAGCa--- -3'
miRNA:   3'- uaaUGaCCGGAGCCGCGGgUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 198992 0.68 0.737343
Target:  5'- ---cCUGGCgCUCGGCaggGCCgCGGCCgAGg -3'
miRNA:   3'- uaauGACCG-GAGCCG---CGG-GUCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 24117 0.68 0.72783
Target:  5'- --gACgucGGCCUCGGCGgCCCAuCCg-- -3'
miRNA:   3'- uaaUGa--CCGGAGCCGC-GGGUcGGauc -5'
16164 3' -59.3 NC_004065.1 + 221887 0.68 0.722085
Target:  5'- ----aUGGCCuUcugcgucgaccucgaCGGCGCCCGGCuCUGGg -3'
miRNA:   3'- uaaugACCGG-A---------------GCCGCGGGUCG-GAUC- -5'
16164 3' -59.3 NC_004065.1 + 149475 0.68 0.70858
Target:  5'- -aUGCUGuCCUCGGCGCCCuGGUUc-- -3'
miRNA:   3'- uaAUGACcGGAGCCGCGGG-UCGGauc -5'
16164 3' -59.3 NC_004065.1 + 151086 0.68 0.698858
Target:  5'- -cUGCgcgGGCCUggUGGCGCCCgAGCUcGGc -3'
miRNA:   3'- uaAUGa--CCGGA--GCCGCGGG-UCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 135625 0.67 0.79232
Target:  5'- --cGCgGGUCUaCGGCGCCacCAGCCg-- -3'
miRNA:   3'- uaaUGaCCGGA-GCCGCGG--GUCGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.