Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16164 | 3' | -59.3 | NC_004065.1 | + | 136416 | 0.67 | 0.783449 |
Target: 5'- --aGCUGGuCCUgGGgGCCCggugAGCCgAGg -3' miRNA: 3'- uaaUGACC-GGAgCCgCGGG----UCGGaUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 30495 | 0.66 | 0.801056 |
Target: 5'- --gGCUGGa---GGCGCCCGGCUg-- -3' miRNA: 3'- uaaUGACCggagCCGCGGGUCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 138578 | 0.66 | 0.826369 |
Target: 5'- --gGCgccGCUUCGGCGUCCAGgCCUu- -3' miRNA: 3'- uaaUGac-CGGAGCCGCGGGUC-GGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 159935 | 0.66 | 0.826369 |
Target: 5'- -gUGCUGcucgucGCCUCGGgGUCCGcGCCUu- -3' miRNA: 3'- uaAUGAC------CGGAGCCgCGGGU-CGGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 84028 | 0.66 | 0.834485 |
Target: 5'- -gUACUGGUCUcgaucgagaCGGCGUCC-GCCa-- -3' miRNA: 3'- uaAUGACCGGA---------GCCGCGGGuCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 198992 | 0.68 | 0.737343 |
Target: 5'- ---cCUGGCgCUCGGCaggGCCgCGGCCgAGg -3' miRNA: 3'- uaauGACCG-GAGCCG---CGG-GUCGGaUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 146430 | 0.68 | 0.72783 |
Target: 5'- --aGCUGcgcGCCUCGaacGUGUUCAGCCUGGa -3' miRNA: 3'- uaaUGAC---CGGAGC---CGCGGGUCGGAUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 81615 | 0.68 | 0.698858 |
Target: 5'- -aUGCUGGCCgagacguacuUCGGCGUCCAGg---- -3' miRNA: 3'- uaAUGACCGG----------AGCCGCGGGUCggauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 129052 | 0.69 | 0.669413 |
Target: 5'- ---cCUGGCCUaccggaCGGCGCUguGCCgggAGa -3' miRNA: 3'- uaauGACCGGA------GCCGCGGguCGGa--UC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 85500 | 0.69 | 0.649626 |
Target: 5'- -gUGCUGGCCaugucgcUGGCGCUCGGCUUc- -3' miRNA: 3'- uaAUGACCGGa------GCCGCGGGUCGGAuc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 6934 | 0.71 | 0.531753 |
Target: 5'- -----cGGCCUCGGCGUCC-GCCg-- -3' miRNA: 3'- uaaugaCCGGAGCCGCGGGuCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 101296 | 0.75 | 0.357512 |
Target: 5'- --gGCU-GCCUCGGCGgCCAGCCg-- -3' miRNA: 3'- uaaUGAcCGGAGCCGCgGGUCGGauc -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 29689 | 0.81 | 0.136189 |
Target: 5'- gGUUGCUGaGCCUCGGCGCCCcgacGGgCUGGu -3' miRNA: 3'- -UAAUGAC-CGGAGCCGCGGG----UCgGAUC- -5' |
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16164 | 3' | -59.3 | NC_004065.1 | + | 87091 | 0.66 | 0.842427 |
Target: 5'- --aGCUGGCCcUGGUGCCggaacucgaCGGCCg-- -3' miRNA: 3'- uaaUGACCGGaGCCGCGG---------GUCGGauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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