miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 3' -59.3 NC_004065.1 + 162468 0.7 0.590185
Target:  5'- --gGCgaaGGCCUCGcGCGgCCGGCCaGGa -3'
miRNA:   3'- uaaUGa--CCGGAGC-CGCgGGUCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 109195 0.69 0.65953
Target:  5'- -----aGGCCggcggCGGCGCCuCGGCCUc- -3'
miRNA:   3'- uaaugaCCGGa----GCCGCGG-GUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 122737 0.69 0.679267
Target:  5'- --cACUGGCCgugcgUCgGGCGCCCAGgaucaUCUGGu -3'
miRNA:   3'- uaaUGACCGG-----AG-CCGCGGGUC-----GGAUC- -5'
16164 3' -59.3 NC_004065.1 + 151086 0.68 0.698858
Target:  5'- -cUGCgcgGGCCUggUGGCGCCCgAGCUcGGc -3'
miRNA:   3'- uaAUGa--CCGGA--GCCGCGGG-UCGGaUC- -5'
16164 3' -59.3 NC_004065.1 + 149475 0.68 0.70858
Target:  5'- -aUGCUGuCCUCGGCGCCCuGGUUc-- -3'
miRNA:   3'- uaAUGACcGGAGCCGCGGG-UCGGauc -5'
16164 3' -59.3 NC_004065.1 + 221887 0.68 0.722085
Target:  5'- ----aUGGCCuUcugcgucgaccucgaCGGCGCCCGGCuCUGGg -3'
miRNA:   3'- uaaugACCGG-A---------------GCCGCGGGUCG-GAUC- -5'
16164 3' -59.3 NC_004065.1 + 24117 0.68 0.72783
Target:  5'- --gACgucGGCCUCGGCGgCCCAuCCg-- -3'
miRNA:   3'- uaaUGa--CCGGAGCCGC-GGGUcGGauc -5'
16164 3' -59.3 NC_004065.1 + 55776 0.68 0.737343
Target:  5'- --gGC-GGUCUCGGCGCCgAGCa--- -3'
miRNA:   3'- uaaUGaCCGGAGCCGCGGgUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 37786 0.67 0.765332
Target:  5'- --gACUGGCaCUCaGCGCC-AGCCa-- -3'
miRNA:   3'- uaaUGACCG-GAGcCGCGGgUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 26020 0.67 0.79232
Target:  5'- ----gUGGCCUCGGCGUcguccaCCAGCg--- -3'
miRNA:   3'- uaaugACCGGAGCCGCG------GGUCGgauc -5'
16164 3' -59.3 NC_004065.1 + 135625 0.67 0.79232
Target:  5'- --cGCgGGUCUaCGGCGCCacCAGCCg-- -3'
miRNA:   3'- uaaUGaCCGGA-GCCGCGG--GUCGGauc -5'
16164 3' -59.3 NC_004065.1 + 188982 0.66 0.801056
Target:  5'- --aGCUGGCCguuUUGGCGCa-GGCCUc- -3'
miRNA:   3'- uaaUGACCGG---AGCCGCGggUCGGAuc -5'
16164 3' -59.3 NC_004065.1 + 67125 0.66 0.809647
Target:  5'- -gUGCUGGacagCGGCGCgC-GCCUGGa -3'
miRNA:   3'- uaAUGACCgga-GCCGCGgGuCGGAUC- -5'
16164 3' -59.3 NC_004065.1 + 162637 1.07 0.00249
Target:  5'- cAUUACUGGCCUCGGCGCCCAGCCUAGg -3'
miRNA:   3'- -UAAUGACCGGAGCCGCGGGUCGGAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.