miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 102049 0.66 0.736137
Target:  5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3'
miRNA:   3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 113129 0.66 0.736137
Target:  5'- cAGCUCGAUCcCGCG-CCccAGCGUCAg -3'
miRNA:   3'- -UCGAGCUGGcGCGCaGGccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 41051 0.66 0.736137
Target:  5'- gAGCUCGGgCCGCGCGgcgacgaagCCGaaGAGCuuGUCGu -3'
miRNA:   3'- -UCGAGCU-GGCGCGCa--------GGC--CUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 206797 0.66 0.736137
Target:  5'- cGCUCGugU-CGCGUCCaGAguccguGCGCCu -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCU------CGCGGu -5'
16164 5' -63 NC_004065.1 + 34580 0.66 0.727027
Target:  5'- cGCa-GACCGUGCGcUCCGcGA-CGCCGu -3'
miRNA:   3'- uCGagCUGGCGCGC-AGGC-CUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 207536 0.66 0.727027
Target:  5'- -cCUCG-CCGCGCGcUCCGcGucgucGCGCCu -3'
miRNA:   3'- ucGAGCuGGCGCGC-AGGC-Cu----CGCGGu -5'
16164 5' -63 NC_004065.1 + 104897 0.66 0.727027
Target:  5'- cGGCUgggCGACgGCGCGguggugCCGGcGGCGUa- -3'
miRNA:   3'- -UCGA---GCUGgCGCGCa-----GGCC-UCGCGgu -5'
16164 5' -63 NC_004065.1 + 80296 0.66 0.727027
Target:  5'- cGCUgGACCGCuaugaGUCCG-AGgGCCGg -3'
miRNA:   3'- uCGAgCUGGCGcg---CAGGCcUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 187985 0.66 0.717847
Target:  5'- cAGCUgCGGCCGCGCGcaacauggcUCgCGGAG-GuCCGc -3'
miRNA:   3'- -UCGA-GCUGGCGCGC---------AG-GCCUCgC-GGU- -5'
16164 5' -63 NC_004065.1 + 154887 0.66 0.717847
Target:  5'- uGCUCGccuacuuuuacGCCGUGCGcugcaUGGAGCGCg- -3'
miRNA:   3'- uCGAGC-----------UGGCGCGCag---GCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 18224 0.66 0.717847
Target:  5'- cGGCUCuuccucCCGCGCcucUCCGGAGuCGUCu -3'
miRNA:   3'- -UCGAGcu----GGCGCGc--AGGCCUC-GCGGu -5'
16164 5' -63 NC_004065.1 + 151158 0.66 0.717847
Target:  5'- cGUcggCGACCGCGag-CUGGcGCGCCGg -3'
miRNA:   3'- uCGa--GCUGGCGCgcaGGCCuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 96277 0.66 0.717847
Target:  5'- cGGCggggCGGCCagGgGCGUCaCGGA-CGCCGu -3'
miRNA:   3'- -UCGa---GCUGG--CgCGCAG-GCCUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 85667 0.66 0.717847
Target:  5'- cGGgaCGAuaCUGgGCGUCUGcGGCGCCAu -3'
miRNA:   3'- -UCgaGCU--GGCgCGCAGGCcUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 97416 0.66 0.716925
Target:  5'- cAGCUCGgagaucauGCCGCaGCGguaggaaUCCGuGGCGCCc -3'
miRNA:   3'- -UCGAGC--------UGGCG-CGC-------AGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 114285 0.66 0.708603
Target:  5'- cGGC-CGACUGCGUcuaccucaGUCgGGAuGCGCUg -3'
miRNA:   3'- -UCGaGCUGGCGCG--------CAGgCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 136622 0.66 0.708603
Target:  5'- cGCUgguccgaGGCgGCG-GUCCGGAGCGgCGu -3'
miRNA:   3'- uCGAg------CUGgCGCgCAGGCCUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 29815 0.66 0.708603
Target:  5'- uGCUCGGCCaG-GuCGUCCGGAgauuccgagGCGUCGu -3'
miRNA:   3'- uCGAGCUGG-CgC-GCAGGCCU---------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 139898 0.66 0.708603
Target:  5'- ---gUGGCCGCGgGgccuccggCCGGcGGCGCCAg -3'
miRNA:   3'- ucgaGCUGGCGCgCa-------GGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 36146 0.66 0.708603
Target:  5'- cGGCUcCGAUCGCuaGUCCaGcGGCGCUg -3'
miRNA:   3'- -UCGA-GCUGGCGcgCAGGcC-UCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.