Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 161370 | 0.67 | 0.661693 |
Target: 5'- cGC-CGACUGCGCGUacgccUCGGccgccuGUGCCAg -3' miRNA: 3'- uCGaGCUGGCGCGCA-----GGCCu-----CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 54450 | 0.67 | 0.661693 |
Target: 5'- cGCUCGcuguuCgCGCGCGgucugCCGcGAGCGCa- -3' miRNA: 3'- uCGAGCu----G-GCGCGCa----GGC-CUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 127637 | 0.67 | 0.642737 |
Target: 5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3' miRNA: 3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 164545 | 0.67 | 0.642737 |
Target: 5'- uAGCUCG-CUGUGuCGagCCGGcggcGGCGCCGa -3' miRNA: 3'- -UCGAGCuGGCGC-GCa-GGCC----UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 142704 | 0.67 | 0.6702 |
Target: 5'- uGCUCcugGACCG-GCGUCgGGgguccugGGCGCCu -3' miRNA: 3'- uCGAG---CUGGCgCGCAGgCC-------UCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 109912 | 0.67 | 0.633245 |
Target: 5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3' miRNA: 3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 150506 | 0.67 | 0.632295 |
Target: 5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3' miRNA: 3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 162467 | 0.67 | 0.623752 |
Target: 5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3' miRNA: 3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 138244 | 0.67 | 0.671144 |
Target: 5'- cGCUCG-CCGC-CGUCgaGGAGgGUCGg -3' miRNA: 3'- uCGAGCuGGCGcGCAGg-CCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 78664 | 0.67 | 0.671144 |
Target: 5'- cAGCgcagCGGCCG-GCG-CCGcGGCGCCc -3' miRNA: 3'- -UCGa---GCUGGCgCGCaGGCcUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 141868 | 0.67 | 0.671144 |
Target: 5'- cGCUCGuCCG-GCGagCGG-GCGCCc -3' miRNA: 3'- uCGAGCuGGCgCGCagGCCuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 26910 | 0.67 | 0.661693 |
Target: 5'- cGCUCGACCGCaCG-CCGGAcC-CCGa -3' miRNA: 3'- uCGAGCUGGCGcGCaGGCCUcGcGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 152813 | 0.67 | 0.661693 |
Target: 5'- cAGCgUGGCCaucGC-CGUgCGGGGCGCCGc -3' miRNA: 3'- -UCGaGCUGG---CGcGCAgGCCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 88956 | 0.67 | 0.642737 |
Target: 5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3' miRNA: 3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 33628 | 0.68 | 0.614264 |
Target: 5'- uGGCcaaGGCCauCGCGUUCGGGGCGCg- -3' miRNA: 3'- -UCGag-CUGGc-GCGCAGGCCUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 30156 | 0.68 | 0.585895 |
Target: 5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3' miRNA: 3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 136508 | 0.68 | 0.59533 |
Target: 5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3' miRNA: 3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 104658 | 0.68 | 0.567117 |
Target: 5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3' miRNA: 3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 61810 | 0.68 | 0.585895 |
Target: 5'- cAGCUCgGACgGCGCuucaucggaUUCGGAGgCGCCAu -3' miRNA: 3'- -UCGAG-CUGgCGCGc--------AGGCCUC-GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 130476 | 0.68 | 0.59533 |
Target: 5'- cGGC-CGuCCGcCGCGgcgagaCgGGAGCGCCGa -3' miRNA: 3'- -UCGaGCuGGC-GCGCa-----GgCCUCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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