miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 162671 1.01 0.004104
Target:  5'- uAGaCUCGACCGCGCGUCCGGAGCGCCAu -3'
miRNA:   3'- -UC-GAGCUGGCGCGCAGGCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 64640 0.78 0.166944
Target:  5'- aGGCcaUCGACCGCGCGUCCGccGUGCUg -3'
miRNA:   3'- -UCG--AGCUGGCGCGCAGGCcuCGCGGu -5'
16164 5' -63 NC_004065.1 + 117396 0.76 0.225442
Target:  5'- cGCUCGGCCGCGCGcgCUGGgcucgcGGCGCgGa -3'
miRNA:   3'- uCGAGCUGGCGCGCa-GGCC------UCGCGgU- -5'
16164 5' -63 NC_004065.1 + 130790 0.75 0.241207
Target:  5'- cGGCUCGACUGCGagaCGUCCaucuuccuGGAGCGCg- -3'
miRNA:   3'- -UCGAGCUGGCGC---GCAGG--------CCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 76397 0.75 0.25788
Target:  5'- gAGCUCG-CCGC-CGUCCGaGuGGCGCCGc -3'
miRNA:   3'- -UCGAGCuGGCGcGCAGGC-C-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 91492 0.75 0.25788
Target:  5'- cGCUCGugC-CGCGUUC-GAGCGCCAa -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 26950 0.73 0.334025
Target:  5'- cGCUccggCGGCCGCgGCGggcUCCGGAGCucGCCAa -3'
miRNA:   3'- uCGA----GCUGGCG-CGC---AGGCCUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 120027 0.72 0.355463
Target:  5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3'
miRNA:   3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 152352 0.72 0.377091
Target:  5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3'
miRNA:   3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 97922 0.71 0.401172
Target:  5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3'
miRNA:   3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5'
16164 5' -63 NC_004065.1 + 43957 0.71 0.417217
Target:  5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3'
miRNA:   3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5'
16164 5' -63 NC_004065.1 + 92052 0.71 0.425386
Target:  5'- cGCUCGAggcaucucaCGCGCGcUCGGAGgGCCGc -3'
miRNA:   3'- uCGAGCUg--------GCGCGCaGGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 169372 0.71 0.442004
Target:  5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3'
miRNA:   3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5'
16164 5' -63 NC_004065.1 + 101425 0.7 0.476304
Target:  5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3'
miRNA:   3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 121470 0.7 0.458983
Target:  5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3'
miRNA:   3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5'
16164 5' -63 NC_004065.1 + 82768 0.7 0.485085
Target:  5'- cGGcCUCGGagaGCagGCGUCCGGuGGCGCCGa -3'
miRNA:   3'- -UC-GAGCUgg-CG--CGCAGGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 202729 0.7 0.493942
Target:  5'- uAGgaCGGCCGUuucggcucGUGUCCcGAGCGCCGu -3'
miRNA:   3'- -UCgaGCUGGCG--------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 27774 0.7 0.467602
Target:  5'- cGCUgCG-CCGC-CGUCUGGAGgGCCu -3'
miRNA:   3'- uCGA-GCuGGCGcGCAGGCCUCgCGGu -5'
16164 5' -63 NC_004065.1 + 58613 0.7 0.458983
Target:  5'- gAGaUCGACgCGCGCGg-CGGAGuCGCCGg -3'
miRNA:   3'- -UCgAGCUG-GCGCGCagGCCUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 127323 0.7 0.458983
Target:  5'- cGC-CGACUGCGCGcgucaagagcgcUCCGGucuGCGUCAa -3'
miRNA:   3'- uCGaGCUGGCGCGC------------AGGCCu--CGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.