miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 61810 0.68 0.585895
Target:  5'- cAGCUCgGACgGCGCuucaucggaUUCGGAGgCGCCAu -3'
miRNA:   3'- -UCGAG-CUGgCGCGc--------AGGCCUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 30156 0.68 0.585895
Target:  5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3'
miRNA:   3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5'
16164 5' -63 NC_004065.1 + 104658 0.68 0.567117
Target:  5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3'
miRNA:   3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 30866 0.68 0.604789
Target:  5'- cAGCcugUCGACgGCGgGUUC-GAGCGCCc -3'
miRNA:   3'- -UCG---AGCUGgCGCgCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 122734 0.68 0.614264
Target:  5'- uAGCacUGGCCGUGCGU-CGG-GCGCCc -3'
miRNA:   3'- -UCGa-GCUGGCGCGCAgGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 54450 0.67 0.661693
Target:  5'- cGCUCGcuguuCgCGCGCGgucugCCGcGAGCGCa- -3'
miRNA:   3'- uCGAGCu----G-GCGCGCa----GGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 162467 0.67 0.623752
Target:  5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3'
miRNA:   3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 127637 0.67 0.642737
Target:  5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3'
miRNA:   3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 88956 0.67 0.642737
Target:  5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3'
miRNA:   3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 164545 0.67 0.642737
Target:  5'- uAGCUCG-CUGUGuCGagCCGGcggcGGCGCCGa -3'
miRNA:   3'- -UCGAGCuGGCGC-GCa-GGCC----UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 109912 0.67 0.633245
Target:  5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3'
miRNA:   3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 142704 0.67 0.6702
Target:  5'- uGCUCcugGACCG-GCGUCgGGgguccugGGCGCCu -3'
miRNA:   3'- uCGAG---CUGGCgCGCAGgCC-------UCGCGGu -5'
16164 5' -63 NC_004065.1 + 138244 0.67 0.671144
Target:  5'- cGCUCG-CCGC-CGUCgaGGAGgGUCGg -3'
miRNA:   3'- uCGAGCuGGCGcGCAGg-CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 150506 0.67 0.632295
Target:  5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3'
miRNA:   3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5'
16164 5' -63 NC_004065.1 + 119248 0.67 0.641788
Target:  5'- cGCUCcgaaacgGGCCGCGCG-CCuuauaugucaGGcGGCGCCAg -3'
miRNA:   3'- uCGAG-------CUGGCGCGCaGG----------CC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 164336 0.67 0.633245
Target:  5'- cAGCUCGcacgcCCGCGCGaugUCCucGGGCGUCGg -3'
miRNA:   3'- -UCGAGCu----GGCGCGC---AGGc-CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 79333 0.67 0.633245
Target:  5'- cGGUUCGugCGCGCGgaggaCGaGGGCGgCGc -3'
miRNA:   3'- -UCGAGCugGCGCGCag---GC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 67558 0.67 0.633245
Target:  5'- uGGC-CGGCCGCGCGaggccuucgCCGaAGCGCa- -3'
miRNA:   3'- -UCGaGCUGGCGCGCa--------GGCcUCGCGgu -5'
16164 5' -63 NC_004065.1 + 78664 0.67 0.671144
Target:  5'- cAGCgcagCGGCCG-GCG-CCGcGGCGCCc -3'
miRNA:   3'- -UCGa---GCUGGCgCGCaGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 26910 0.67 0.661693
Target:  5'- cGCUCGACCGCaCG-CCGGAcC-CCGa -3'
miRNA:   3'- uCGAGCUGGCGcGCaGGCCUcGcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.