Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 164336 | 0.67 | 0.633245 |
Target: 5'- cAGCUCGcacgcCCGCGCGaugUCCucGGGCGUCGg -3' miRNA: 3'- -UCGAGCu----GGCGCGC---AGGc-CUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 141868 | 0.67 | 0.671144 |
Target: 5'- cGCUCGuCCG-GCGagCGG-GCGCCc -3' miRNA: 3'- uCGAGCuGGCgCGCagGCCuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 161370 | 0.67 | 0.661693 |
Target: 5'- cGC-CGACUGCGCGUacgccUCGGccgccuGUGCCAg -3' miRNA: 3'- uCGaGCUGGCGCGCA-----GGCCu-----CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 152813 | 0.67 | 0.661693 |
Target: 5'- cAGCgUGGCCaucGC-CGUgCGGGGCGCCGc -3' miRNA: 3'- -UCGaGCUGG---CGcGCAgGCCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 78664 | 0.67 | 0.671144 |
Target: 5'- cAGCgcagCGGCCG-GCG-CCGcGGCGCCc -3' miRNA: 3'- -UCGa---GCUGGCgCGCaGGCcUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 138244 | 0.67 | 0.671144 |
Target: 5'- cGCUCG-CCGC-CGUCgaGGAGgGUCGg -3' miRNA: 3'- uCGAGCuGGCGcGCAGg-CCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 142704 | 0.67 | 0.6702 |
Target: 5'- uGCUCcugGACCG-GCGUCgGGgguccugGGCGCCu -3' miRNA: 3'- uCGAG---CUGGCgCGCAGgCC-------UCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 102049 | 0.66 | 0.736137 |
Target: 5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3' miRNA: 3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 124461 | 0.66 | 0.708603 |
Target: 5'- cGC-CGACgGCGCGccgugCCGcuGCGCCGg -3' miRNA: 3'- uCGaGCUGgCGCGCa----GGCcuCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 97416 | 0.66 | 0.716925 |
Target: 5'- cAGCUCGgagaucauGCCGCaGCGguaggaaUCCGuGGCGCCc -3' miRNA: 3'- -UCGAGC--------UGGCG-CGC-------AGGCcUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 18224 | 0.66 | 0.717847 |
Target: 5'- cGGCUCuuccucCCGCGCcucUCCGGAGuCGUCu -3' miRNA: 3'- -UCGAGcu----GGCGCGc--AGGCCUC-GCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 151158 | 0.66 | 0.717847 |
Target: 5'- cGUcggCGACCGCGag-CUGGcGCGCCGg -3' miRNA: 3'- uCGa--GCUGGCGCgcaGGCCuCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 106590 | 0.66 | 0.699304 |
Target: 5'- uGUUCGGCC-CGUcucUCCGGAcgguGCGCCGa -3' miRNA: 3'- uCGAGCUGGcGCGc--AGGCCU----CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 96277 | 0.66 | 0.717847 |
Target: 5'- cGGCggggCGGCCagGgGCGUCaCGGA-CGCCGu -3' miRNA: 3'- -UCGa---GCUGG--CgCGCAG-GCCUcGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 187985 | 0.66 | 0.717847 |
Target: 5'- cAGCUgCGGCCGCGCGcaacauggcUCgCGGAG-GuCCGc -3' miRNA: 3'- -UCGA-GCUGGCGCGC---------AG-GCCUCgC-GGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 34580 | 0.66 | 0.727027 |
Target: 5'- cGCa-GACCGUGCGcUCCGcGA-CGCCGu -3' miRNA: 3'- uCGagCUGGCGCGC-AGGC-CUcGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 207536 | 0.66 | 0.727027 |
Target: 5'- -cCUCG-CCGCGCGcUCCGcGucgucGCGCCu -3' miRNA: 3'- ucGAGCuGGCGCGC-AGGC-Cu----CGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 41051 | 0.66 | 0.736137 |
Target: 5'- gAGCUCGGgCCGCGCGgcgacgaagCCGaaGAGCuuGUCGu -3' miRNA: 3'- -UCGAGCU-GGCGCGCa--------GGC--CUCG--CGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 206797 | 0.66 | 0.736137 |
Target: 5'- cGCUCGugU-CGCGUCCaGAguccguGCGCCu -3' miRNA: 3'- uCGAGCugGcGCGCAGGcCU------CGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 113129 | 0.66 | 0.736137 |
Target: 5'- cAGCUCGAUCcCGCG-CCccAGCGUCAg -3' miRNA: 3'- -UCGAGCUGGcGCGCaGGccUCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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