miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 192305 0.69 0.511874
Target:  5'- cAGCUUcACgCGCGUGUCCGGGcacgacGCGUCGa -3'
miRNA:   3'- -UCGAGcUG-GCGCGCAGGCCU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 200887 0.69 0.52094
Target:  5'- gGGCUCGGCUGCcCGUCgCGcuGGGCGaCCGg -3'
miRNA:   3'- -UCGAGCUGGCGcGCAG-GC--CUCGC-GGU- -5'
16164 5' -63 NC_004065.1 + 4373 0.69 0.52094
Target:  5'- gAGCgCGACgGCgGCGgcgggagCCGGAGUGCUg -3'
miRNA:   3'- -UCGaGCUGgCG-CGCa------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 68578 0.69 0.52094
Target:  5'- gAGCaacgCGGCgGCgGCGaUCCaGAGCGCCGa -3'
miRNA:   3'- -UCGa---GCUGgCG-CGC-AGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 130501 0.69 0.530069
Target:  5'- uGCUCaucgaGCCGCGCGUCCuccucgugcGCGCCAg -3'
miRNA:   3'- uCGAGc----UGGCGCGCAGGccu------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 163875 0.69 0.530069
Target:  5'- cGCUCGGCCagcugGCGCcgGUCCGcGGcccagcGCGCCAg -3'
miRNA:   3'- uCGAGCUGG-----CGCG--CAGGC-CU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 37414 0.69 0.539255
Target:  5'- cGGUgucCGACgGCGCGUucacgCUGGAGCGCg- -3'
miRNA:   3'- -UCGa--GCUGgCGCGCA-----GGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 200226 0.69 0.557784
Target:  5'- uGGC-CGAgCaGCGUGUaacggcccgCCGGAGCGCCc -3'
miRNA:   3'- -UCGaGCUgG-CGCGCA---------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 31029 0.69 0.557784
Target:  5'- -cCUCGGCCGCG-GcCCugccGAGCGCCAg -3'
miRNA:   3'- ucGAGCUGGCGCgCaGGc---CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 65437 0.69 0.557784
Target:  5'- gAGCggCGGCCGUgGUGgcUCUGGAGCGCgAa -3'
miRNA:   3'- -UCGa-GCUGGCG-CGC--AGGCCUCGCGgU- -5'
16164 5' -63 NC_004065.1 + 101845 0.69 0.557784
Target:  5'- uGCUCGcggGgGCGUCgGGGGCGCUAu -3'
miRNA:   3'- uCGAGCuggCgCGCAGgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 104658 0.68 0.567117
Target:  5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3'
miRNA:   3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 114573 0.68 0.576489
Target:  5'- cGGaucgCGAcCCGCGCGg-CGGAGUGCCc -3'
miRNA:   3'- -UCga--GCU-GGCGCGCagGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 116703 0.68 0.585895
Target:  5'- uAGaucaUCGAUCcCGCGUCCGGcGCGCgAg -3'
miRNA:   3'- -UCg---AGCUGGcGCGCAGGCCuCGCGgU- -5'
16164 5' -63 NC_004065.1 + 61810 0.68 0.585895
Target:  5'- cAGCUCgGACgGCGCuucaucggaUUCGGAGgCGCCAu -3'
miRNA:   3'- -UCGAG-CUGgCGCGc--------AGGCCUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 30156 0.68 0.585895
Target:  5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3'
miRNA:   3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5'
16164 5' -63 NC_004065.1 + 162995 0.68 0.592497
Target:  5'- cAGUUCGAcaugcacuggcugcCCGCGCGgggcCCGuacacGGGCGCCGa -3'
miRNA:   3'- -UCGAGCU--------------GGCGCGCa---GGC-----CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 130476 0.68 0.59533
Target:  5'- cGGC-CGuCCGcCGCGgcgagaCgGGAGCGCCGa -3'
miRNA:   3'- -UCGaGCuGGC-GCGCa-----GgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 198918 0.68 0.59533
Target:  5'- -uCUCGAUCGCGCGccgCCGG-GCGUUc -3'
miRNA:   3'- ucGAGCUGGCGCGCa--GGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 136508 0.68 0.59533
Target:  5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3'
miRNA:   3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.