miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 136622 0.66 0.708603
Target:  5'- cGCUgguccgaGGCgGCG-GUCCGGAGCGgCGu -3'
miRNA:   3'- uCGAg------CUGgCGCgCAGGCCUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 106590 0.66 0.699304
Target:  5'- uGUUCGGCC-CGUcucUCCGGAcgguGCGCCGa -3'
miRNA:   3'- uCGAGCUGGcGCGc--AGGCCU----CGCGGU- -5'
16164 5' -63 NC_004065.1 + 151529 0.66 0.699304
Target:  5'- cGCUgcCGGCCGgGCGgugUCGGGcGCGCUu -3'
miRNA:   3'- uCGA--GCUGGCgCGCa--GGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 82620 0.66 0.699304
Target:  5'- uGCUgGACgCGguUGCGUCCGGGggcgaaccucuGCGCCc -3'
miRNA:   3'- uCGAgCUG-GC--GCGCAGGCCU-----------CGCGGu -5'
16164 5' -63 NC_004065.1 + 114952 0.66 0.699304
Target:  5'- gAGC-CGACCGaggcCGCGUCCucgcGcGCGCCGu -3'
miRNA:   3'- -UCGaGCUGGC----GCGCAGGc---CuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 78190 0.66 0.696504
Target:  5'- uGCUCGACgaacgcguacccguCGCGCGUC--GAGCGCg- -3'
miRNA:   3'- uCGAGCUG--------------GCGCGCAGgcCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 146832 0.66 0.689956
Target:  5'- gGGaCUCGAgaGCGgGccgCCgGGAGCGCCu -3'
miRNA:   3'- -UC-GAGCUggCGCgCa--GG-CCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 70336 0.66 0.680567
Target:  5'- cGGCggCGACgGCgGCGa--GGAGCGCCu -3'
miRNA:   3'- -UCGa-GCUGgCG-CGCaggCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 102881 0.66 0.680567
Target:  5'- gGGCgaUCG-CCGC-CG-CCGGuAGCGCCGc -3'
miRNA:   3'- -UCG--AGCuGGCGcGCaGGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 24989 0.66 0.680567
Target:  5'- -cCUCGGCCuuuuguguguGgGCGUCCGuGGGCGCg- -3'
miRNA:   3'- ucGAGCUGG----------CgCGCAGGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 199515 0.66 0.679626
Target:  5'- cGCggCGGCCgccacguGCGCGcagCCGG-GCGCCu -3'
miRNA:   3'- uCGa-GCUGG-------CGCGCa--GGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 24471 0.66 0.677743
Target:  5'- cAGCUCgGACauggGCGCGUagauggcaccgccgCCGGcccugAGCGCCGg -3'
miRNA:   3'- -UCGAG-CUGg---CGCGCA--------------GGCC-----UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 138244 0.67 0.671144
Target:  5'- cGCUCG-CCGC-CGUCgaGGAGgGUCGg -3'
miRNA:   3'- uCGAGCuGGCGcGCAGg-CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 78664 0.67 0.671144
Target:  5'- cAGCgcagCGGCCG-GCG-CCGcGGCGCCc -3'
miRNA:   3'- -UCGa---GCUGGCgCGCaGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 141868 0.67 0.671144
Target:  5'- cGCUCGuCCG-GCGagCGG-GCGCCc -3'
miRNA:   3'- uCGAGCuGGCgCGCagGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 142704 0.67 0.6702
Target:  5'- uGCUCcugGACCG-GCGUCgGGgguccugGGCGCCu -3'
miRNA:   3'- uCGAG---CUGGCgCGCAGgCC-------UCGCGGu -5'
16164 5' -63 NC_004065.1 + 126259 0.67 0.661693
Target:  5'- cAGCU--GCUGCGCGacggUCCGGAGgcccCGCCGc -3'
miRNA:   3'- -UCGAgcUGGCGCGC----AGGCCUC----GCGGU- -5'
16164 5' -63 NC_004065.1 + 54450 0.67 0.661693
Target:  5'- cGCUCGcuguuCgCGCGCGgucugCCGcGAGCGCa- -3'
miRNA:   3'- uCGAGCu----G-GCGCGCa----GGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 161370 0.67 0.661693
Target:  5'- cGC-CGACUGCGCGUacgccUCGGccgccuGUGCCAg -3'
miRNA:   3'- uCGaGCUGGCGCGCA-----GGCCu-----CGCGGU- -5'
16164 5' -63 NC_004065.1 + 152813 0.67 0.661693
Target:  5'- cAGCgUGGCCaucGC-CGUgCGGGGCGCCGc -3'
miRNA:   3'- -UCGaGCUGG---CGcGCAgGCCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.