Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 126259 | 0.67 | 0.661693 |
Target: 5'- cAGCU--GCUGCGCGacggUCCGGAGgcccCGCCGc -3' miRNA: 3'- -UCGAgcUGGCGCGC----AGGCCUC----GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 158167 | 0.67 | 0.642737 |
Target: 5'- uGgUCGGCCGCGCuuUCCGGAucccUGCCGc -3' miRNA: 3'- uCgAGCUGGCGCGc-AGGCCUc---GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 111908 | 0.67 | 0.642737 |
Target: 5'- -cCUCGuCCGCGCGgcgaCGaGAGaCGCCAu -3' miRNA: 3'- ucGAGCuGGCGCGCag--GC-CUC-GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 164545 | 0.67 | 0.642737 |
Target: 5'- uAGCUCG-CUGUGuCGagCCGGcggcGGCGCCGa -3' miRNA: 3'- -UCGAGCuGGCGC-GCa-GGCC----UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 88956 | 0.67 | 0.642737 |
Target: 5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3' miRNA: 3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 127637 | 0.67 | 0.642737 |
Target: 5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3' miRNA: 3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 152050 | 0.67 | 0.642737 |
Target: 5'- cGGCUCG-CCGCggccaGCGUCuCGGGGCucgacGUCAc -3' miRNA: 3'- -UCGAGCuGGCG-----CGCAG-GCCUCG-----CGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 119248 | 0.67 | 0.641788 |
Target: 5'- cGCUCcgaaacgGGCCGCGCG-CCuuauaugucaGGcGGCGCCAg -3' miRNA: 3'- uCGAG-------CUGGCGCGCaGG----------CC-UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 67558 | 0.67 | 0.633245 |
Target: 5'- uGGC-CGGCCGCGCGaggccuucgCCGaAGCGCa- -3' miRNA: 3'- -UCGaGCUGGCGCGCa--------GGCcUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 164336 | 0.67 | 0.633245 |
Target: 5'- cAGCUCGcacgcCCGCGCGaugUCCucGGGCGUCGg -3' miRNA: 3'- -UCGAGCu----GGCGCGC---AGGc-CUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 79333 | 0.67 | 0.633245 |
Target: 5'- cGGUUCGugCGCGCGgaggaCGaGGGCGgCGc -3' miRNA: 3'- -UCGAGCugGCGCGCag---GC-CUCGCgGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 109912 | 0.67 | 0.633245 |
Target: 5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3' miRNA: 3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 150506 | 0.67 | 0.632295 |
Target: 5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3' miRNA: 3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 162467 | 0.67 | 0.623752 |
Target: 5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3' miRNA: 3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 33628 | 0.68 | 0.614264 |
Target: 5'- uGGCcaaGGCCauCGCGUUCGGGGCGCg- -3' miRNA: 3'- -UCGag-CUGGc-GCGCAGGCCUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 128446 | 0.68 | 0.614264 |
Target: 5'- gAGCgCGGCgGagGCGUCCGcGGGCGCg- -3' miRNA: 3'- -UCGaGCUGgCg-CGCAGGC-CUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 122734 | 0.68 | 0.614264 |
Target: 5'- uAGCacUGGCCGUGCGU-CGG-GCGCCc -3' miRNA: 3'- -UCGa-GCUGGCGCGCAgGCCuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 30866 | 0.68 | 0.604789 |
Target: 5'- cAGCcugUCGACgGCGgGUUC-GAGCGCCc -3' miRNA: 3'- -UCG---AGCUGgCGCgCAGGcCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 103764 | 0.68 | 0.599111 |
Target: 5'- gGGcCUCcgGACCGuCGCGcagcagcuggugaucUCCGcGAGCGCCGc -3' miRNA: 3'- -UC-GAG--CUGGC-GCGC---------------AGGC-CUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 136508 | 0.68 | 0.59533 |
Target: 5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3' miRNA: 3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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