Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 82768 | 0.7 | 0.485085 |
Target: 5'- cGGcCUCGGagaGCagGCGUCCGGuGGCGCCGa -3' miRNA: 3'- -UC-GAGCUgg-CG--CGCAGGCC-UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 101425 | 0.7 | 0.476304 |
Target: 5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3' miRNA: 3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 27774 | 0.7 | 0.467602 |
Target: 5'- cGCUgCG-CCGC-CGUCUGGAGgGCCu -3' miRNA: 3'- uCGA-GCuGGCGcGCAGGCCUCgCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 58613 | 0.7 | 0.458983 |
Target: 5'- gAGaUCGACgCGCGCGg-CGGAGuCGCCGg -3' miRNA: 3'- -UCgAGCUG-GCGCGCagGCCUC-GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 121470 | 0.7 | 0.458983 |
Target: 5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3' miRNA: 3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 127323 | 0.7 | 0.458983 |
Target: 5'- cGC-CGACUGCGCGcgucaagagcgcUCCGGucuGCGUCAa -3' miRNA: 3'- uCGaGCUGGCGCGC------------AGGCCu--CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 169372 | 0.71 | 0.442004 |
Target: 5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3' miRNA: 3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 92052 | 0.71 | 0.425386 |
Target: 5'- cGCUCGAggcaucucaCGCGCGcUCGGAGgGCCGc -3' miRNA: 3'- uCGAGCUg--------GCGCGCaGGCCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 43957 | 0.71 | 0.417217 |
Target: 5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3' miRNA: 3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 97922 | 0.71 | 0.401172 |
Target: 5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3' miRNA: 3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 152352 | 0.72 | 0.377091 |
Target: 5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3' miRNA: 3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 120027 | 0.72 | 0.355463 |
Target: 5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3' miRNA: 3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 26950 | 0.73 | 0.334025 |
Target: 5'- cGCUccggCGGCCGCgGCGggcUCCGGAGCucGCCAa -3' miRNA: 3'- uCGA----GCUGGCG-CGC---AGGCCUCG--CGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 91492 | 0.75 | 0.25788 |
Target: 5'- cGCUCGugC-CGCGUUC-GAGCGCCAa -3' miRNA: 3'- uCGAGCugGcGCGCAGGcCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 76397 | 0.75 | 0.25788 |
Target: 5'- gAGCUCG-CCGC-CGUCCGaGuGGCGCCGc -3' miRNA: 3'- -UCGAGCuGGCGcGCAGGC-C-UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 130790 | 0.75 | 0.241207 |
Target: 5'- cGGCUCGACUGCGagaCGUCCaucuuccuGGAGCGCg- -3' miRNA: 3'- -UCGAGCUGGCGC---GCAGG--------CCUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 117396 | 0.76 | 0.225442 |
Target: 5'- cGCUCGGCCGCGCGcgCUGGgcucgcGGCGCgGa -3' miRNA: 3'- uCGAGCUGGCGCGCa-GGCC------UCGCGgU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 64640 | 0.78 | 0.166944 |
Target: 5'- aGGCcaUCGACCGCGCGUCCGccGUGCUg -3' miRNA: 3'- -UCG--AGCUGGCGCGCAGGCcuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 162671 | 1.01 | 0.004104 |
Target: 5'- uAGaCUCGACCGCGCGUCCGGAGCGCCAu -3' miRNA: 3'- -UC-GAGCUGGCGCGCAGGCCUCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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