miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 4373 0.69 0.52094
Target:  5'- gAGCgCGACgGCgGCGgcgggagCCGGAGUGCUg -3'
miRNA:   3'- -UCGaGCUGgCG-CGCa------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 18224 0.66 0.717847
Target:  5'- cGGCUCuuccucCCGCGCcucUCCGGAGuCGUCu -3'
miRNA:   3'- -UCGAGcu----GGCGCGc--AGGCCUC-GCGGu -5'
16164 5' -63 NC_004065.1 + 24471 0.66 0.677743
Target:  5'- cAGCUCgGACauggGCGCGUagauggcaccgccgCCGGcccugAGCGCCGg -3'
miRNA:   3'- -UCGAG-CUGg---CGCGCA--------------GGCC-----UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 24989 0.66 0.680567
Target:  5'- -cCUCGGCCuuuuguguguGgGCGUCCGuGGGCGCg- -3'
miRNA:   3'- ucGAGCUGG----------CgCGCAGGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 26910 0.67 0.661693
Target:  5'- cGCUCGACCGCaCG-CCGGAcC-CCGa -3'
miRNA:   3'- uCGAGCUGGCGcGCaGGCCUcGcGGU- -5'
16164 5' -63 NC_004065.1 + 26950 0.73 0.334025
Target:  5'- cGCUccggCGGCCGCgGCGggcUCCGGAGCucGCCAa -3'
miRNA:   3'- uCGA----GCUGGCG-CGC---AGGCCUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 27774 0.7 0.467602
Target:  5'- cGCUgCG-CCGC-CGUCUGGAGgGCCu -3'
miRNA:   3'- uCGA-GCuGGCGcGCAGGCCUCgCGGu -5'
16164 5' -63 NC_004065.1 + 29815 0.66 0.708603
Target:  5'- uGCUCGGCCaG-GuCGUCCGGAgauuccgagGCGUCGu -3'
miRNA:   3'- uCGAGCUGG-CgC-GCAGGCCU---------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 30156 0.68 0.585895
Target:  5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3'
miRNA:   3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5'
16164 5' -63 NC_004065.1 + 30866 0.68 0.604789
Target:  5'- cAGCcugUCGACgGCGgGUUC-GAGCGCCc -3'
miRNA:   3'- -UCG---AGCUGgCGCgCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 31029 0.69 0.557784
Target:  5'- -cCUCGGCCGCG-GcCCugccGAGCGCCAg -3'
miRNA:   3'- ucGAGCUGGCGCgCaGGc---CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 33628 0.68 0.614264
Target:  5'- uGGCcaaGGCCauCGCGUUCGGGGCGCg- -3'
miRNA:   3'- -UCGag-CUGGc-GCGCAGGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 34580 0.66 0.727027
Target:  5'- cGCa-GACCGUGCGcUCCGcGA-CGCCGu -3'
miRNA:   3'- uCGagCUGGCGCGC-AGGC-CUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 36146 0.66 0.708603
Target:  5'- cGGCUcCGAUCGCuaGUCCaGcGGCGCUg -3'
miRNA:   3'- -UCGA-GCUGGCGcgCAGGcC-UCGCGGu -5'
16164 5' -63 NC_004065.1 + 37414 0.69 0.539255
Target:  5'- cGGUgucCGACgGCGCGUucacgCUGGAGCGCg- -3'
miRNA:   3'- -UCGa--GCUGgCGCGCA-----GGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 41051 0.66 0.736137
Target:  5'- gAGCUCGGgCCGCGCGgcgacgaagCCGaaGAGCuuGUCGu -3'
miRNA:   3'- -UCGAGCU-GGCGCGCa--------GGC--CUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 43957 0.71 0.417217
Target:  5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3'
miRNA:   3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5'
16164 5' -63 NC_004065.1 + 54450 0.67 0.661693
Target:  5'- cGCUCGcuguuCgCGCGCGgucugCCGcGAGCGCa- -3'
miRNA:   3'- uCGAGCu----G-GCGCGCa----GGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 58613 0.7 0.458983
Target:  5'- gAGaUCGACgCGCGCGg-CGGAGuCGCCGg -3'
miRNA:   3'- -UCgAGCUG-GCGCGCagGCCUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 61810 0.68 0.585895
Target:  5'- cAGCUCgGACgGCGCuucaucggaUUCGGAGgCGCCAu -3'
miRNA:   3'- -UCGAG-CUGgCGCGc--------AGGCCUC-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.