miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 64640 0.78 0.166944
Target:  5'- aGGCcaUCGACCGCGCGUCCGccGUGCUg -3'
miRNA:   3'- -UCG--AGCUGGCGCGCAGGCcuCGCGGu -5'
16164 5' -63 NC_004065.1 + 65437 0.69 0.557784
Target:  5'- gAGCggCGGCCGUgGUGgcUCUGGAGCGCgAa -3'
miRNA:   3'- -UCGa-GCUGGCG-CGC--AGGCCUCGCGgU- -5'
16164 5' -63 NC_004065.1 + 67558 0.67 0.633245
Target:  5'- uGGC-CGGCCGCGCGaggccuucgCCGaAGCGCa- -3'
miRNA:   3'- -UCGaGCUGGCGCGCa--------GGCcUCGCGgu -5'
16164 5' -63 NC_004065.1 + 68578 0.69 0.52094
Target:  5'- gAGCaacgCGGCgGCgGCGaUCCaGAGCGCCGa -3'
miRNA:   3'- -UCGa---GCUGgCG-CGC-AGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 70336 0.66 0.680567
Target:  5'- cGGCggCGACgGCgGCGa--GGAGCGCCu -3'
miRNA:   3'- -UCGa-GCUGgCG-CGCaggCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 76397 0.75 0.25788
Target:  5'- gAGCUCG-CCGC-CGUCCGaGuGGCGCCGc -3'
miRNA:   3'- -UCGAGCuGGCGcGCAGGC-C-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 78190 0.66 0.696504
Target:  5'- uGCUCGACgaacgcguacccguCGCGCGUC--GAGCGCg- -3'
miRNA:   3'- uCGAGCUG--------------GCGCGCAGgcCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 78664 0.67 0.671144
Target:  5'- cAGCgcagCGGCCG-GCG-CCGcGGCGCCc -3'
miRNA:   3'- -UCGa---GCUGGCgCGCaGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 79333 0.67 0.633245
Target:  5'- cGGUUCGugCGCGCGgaggaCGaGGGCGgCGc -3'
miRNA:   3'- -UCGAGCugGCGCGCag---GC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 80296 0.66 0.727027
Target:  5'- cGCUgGACCGCuaugaGUCCG-AGgGCCGg -3'
miRNA:   3'- uCGAgCUGGCGcg---CAGGCcUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 82620 0.66 0.699304
Target:  5'- uGCUgGACgCGguUGCGUCCGGGggcgaaccucuGCGCCc -3'
miRNA:   3'- uCGAgCUG-GC--GCGCAGGCCU-----------CGCGGu -5'
16164 5' -63 NC_004065.1 + 82768 0.7 0.485085
Target:  5'- cGGcCUCGGagaGCagGCGUCCGGuGGCGCCGa -3'
miRNA:   3'- -UC-GAGCUgg-CG--CGCAGGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 85667 0.66 0.717847
Target:  5'- cGGgaCGAuaCUGgGCGUCUGcGGCGCCAu -3'
miRNA:   3'- -UCgaGCU--GGCgCGCAGGCcUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 88956 0.67 0.642737
Target:  5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3'
miRNA:   3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 91492 0.75 0.25788
Target:  5'- cGCUCGugC-CGCGUUC-GAGCGCCAa -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 92052 0.71 0.425386
Target:  5'- cGCUCGAggcaucucaCGCGCGcUCGGAGgGCCGc -3'
miRNA:   3'- uCGAGCUg--------GCGCGCaGGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 96277 0.66 0.717847
Target:  5'- cGGCggggCGGCCagGgGCGUCaCGGA-CGCCGu -3'
miRNA:   3'- -UCGa---GCUGG--CgCGCAG-GCCUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 97416 0.66 0.716925
Target:  5'- cAGCUCGgagaucauGCCGCaGCGguaggaaUCCGuGGCGCCc -3'
miRNA:   3'- -UCGAGC--------UGGCG-CGC-------AGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 97922 0.71 0.401172
Target:  5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3'
miRNA:   3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5'
16164 5' -63 NC_004065.1 + 101425 0.7 0.476304
Target:  5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3'
miRNA:   3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.